Detailed information NTG0654658

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG429_RS16980
• Genome accession: NZ_CP108131
• Coordinates: 3532845..3533822 (-)
• Length: 325 a.a.
• NCBI ID: WP_328926156.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00190
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3527845..3538822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG429_RS16955 (OG429_16980)	-	3527953..3528363 (+)	411	WP_328926151.1	rodlin	-
OG429_RS16960 (OG429_16985)	-	3528456..3529097 (-)	642	WP_328926152.1	vitamin K epoxide reductase family protein	-
OG429_RS16965 (OG429_16990)	-	3529290..3530060 (+)	771	WP_328926153.1	DUF6227 family protein	-
OG429_RS16970 (OG429_16995)	-	3530121..3531725 (-)	1605	WP_328926154.1	MFS transporter	-
OG429_RS16975 (OG429_17000)	-	3531789..3532757 (+)	969	WP_328926155.1	WYL domain-containing protein	-
OG429_RS16980 (OG429_17005)	rpoS	3532845..3533822 (-)	978	WP_328926156.1	sigma-70 family RNA polymerase sigma factor	Regulator
OG429_RS16985 (OG429_17010)	-	3534017..3534550 (+)	534	WP_328926157.1	N-acetyltransferase family protein	-
OG429_RS16990 (OG429_17015)	-	3534612..3535379 (-)	768	WP_328930311.1	class III extradiol ring-cleavage dioxygenase	-
OG429_RS16995 (OG429_17020)	-	3535509..3537053 (-)	1545	WP_328926158.1	MFS transporter	-
OG429_RS17000 (OG429_17025)	-	3537116..3537865 (-)	750	WP_328926159.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 36517.36 Da
• Isoelectric Point: 5.1285

>NTDB_id=654658 OG429_RS16980 WP_328926156.1 3532845..3533822(-) (rpoS) [Streptomyces sp. NBC_00190]
MATRAVARQQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGVIERKGETPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDQGETQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIVDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide

• Length: 978 bp

>NTDB_id=654658 OG429_RS16980 WP_328926156.1 3532845..3533822(-) (rpoS) [Streptomyces sp. NBC_00190]
ATGGCAACCCGCGCCGTCGCCCGCCAGCAGTCCACGAGCAGCGCTCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCACGCACCCCGCTGCTCGACGCCGCCAAGGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGTCATCGAGCGCAAGGGCGAGACGCCCGCGCGCGAGGAGCTGGAG
GCGCTGGCCGCCGAGGGTGAGCGCGCCAAGGAAGTCTTCATCCGGTCCAACCTGCGCCTCGTGGTGGCCGTCGCCCGCCG
CTACCCGCGCAGTGGTCTGCCCCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGGTCCGCGCGGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGAGCACGCCGAGATCGCCGCCGAGCTCGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTGGACGACCAGGGCGAGACGCAGTTCGGTGACCTCCTGGAGGACACC
TCCGCGATCTCCCCCGAGCAGTCCGTGCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTCGGCAAGCTCGACCA
GCGCACCGCGTCGATCATCAAGATGCGGTACGGCATCGTCGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTTCTGGAACTCAAGCGCATGGCCCGCGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (261-313)

• Sigma-70 region 3 (Sigma70_r3) (172-248)

• Sigma-70 region 2 (Sigma70_r2) (93-162)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (26-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	37.618	98.154	0.369