Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG429_RS15050 Genome accession   NZ_CP108131
Coordinates   3114683..3115714 (-) Length   343 a.a.
NCBI ID   WP_328925840.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00190     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3109683..3120714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG429_RS15025 (OG429_15060) - 3110847..3111380 (-) 534 WP_328925837.1 universal stress protein -
  OG429_RS15030 (OG429_15065) - 3111828..3112148 (+) 321 WP_328930273.1 hypothetical protein -
  OG429_RS15035 (OG429_15070) - 3112525..3113697 (+) 1173 WP_328925838.1 helix-turn-helix domain-containing protein -
  OG429_RS15040 (OG429_15075) orn 3113824..3114426 (+) 603 WP_328925839.1 oligoribonuclease -
  OG429_RS15050 (OG429_15085) cytR 3114683..3115714 (-) 1032 WP_328925840.1 LacI family DNA-binding transcriptional regulator Regulator
  OG429_RS15055 (OG429_15090) - 3115817..3117142 (+) 1326 WP_328925841.1 extracellular solute-binding protein -
  OG429_RS15060 (OG429_15095) - 3117195..3118133 (+) 939 WP_328930274.1 sugar ABC transporter permease -
  OG429_RS15065 (OG429_15100) - 3118130..3118954 (+) 825 WP_328925842.1 carbohydrate ABC transporter permease -
  OG429_RS15070 (OG429_15105) - 3118951..3120309 (+) 1359 WP_328925843.1 GH1 family beta-glucosidase -
  OG429_RS15075 (OG429_15110) - 3120334..3120633 (-) 300 WP_328925844.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36130.12 Da        Isoelectric Point: 8.1265

>NTDB_id=654652 OG429_RS15050 WP_328925840.1 3114683..3115714(-) (cytR) [Streptomyces sp. NBC_00190]
MSGHGRSGGRPTLEEVAARAGVGRGTVSRVINGSSKVSEHTRAVVEAAVAELGYVPNRAARALAANRTDAVALVIPEPEA
RFFAEPYFSDVVRGVGAALAETDVQLVLTLAGSDRERRRLAQYLSGHRVDGVLLVSVHAGDPLPDLLAELGIPTVISGRR
SAAEPLPSVDSDNLAGAAEAVRHLLGRGRRVIATITGPLDVYGAQCRLDGYRQALAAAGHPVDEPLIAVGDFTEDGGRRA
MRELLERRPGLDAVFAASDVMAAGARRELRAAGRRIPQDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMARVLLERI
SGKPGGGAAAVVLPNRLVVRESS

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=654652 OG429_RS15050 WP_328925840.1 3114683..3115714(-) (cytR) [Streptomyces sp. NBC_00190]
ATGAGCGGGCACGGGCGAAGCGGGGGACGGCCGACCCTGGAGGAGGTCGCGGCACGCGCCGGAGTCGGGCGCGGCACGGT
CTCCCGGGTGATCAACGGTTCCTCCAAGGTCAGCGAGCATACGAGGGCGGTGGTCGAGGCGGCCGTCGCGGAGCTGGGGT
ACGTGCCCAACCGCGCCGCGCGCGCCCTCGCGGCCAACCGTACCGACGCCGTCGCGCTGGTGATTCCCGAGCCGGAGGCC
CGCTTCTTCGCCGAGCCGTACTTCTCGGACGTGGTCCGCGGGGTCGGTGCCGCCCTCGCGGAGACCGACGTCCAGCTCGT
CCTCACCCTGGCCGGCAGCGACCGCGAGCGCCGCCGCCTCGCCCAGTACCTGTCCGGGCACCGCGTGGACGGGGTGCTCC
TCGTCTCCGTCCACGCCGGGGACCCGCTGCCCGACCTGCTGGCCGAGCTCGGCATCCCGACGGTGATCAGCGGCCGGCGC
TCCGCCGCCGAGCCCCTGCCCTCCGTGGACTCCGACAACCTGGCGGGCGCCGCCGAGGCCGTACGCCACCTCCTCGGACG
GGGCCGCCGCGTGATCGCCACGATCACCGGCCCGCTGGACGTGTACGGGGCCCAGTGCCGCCTCGACGGCTACCGCCAGG
CCCTGGCCGCCGCCGGGCACCCCGTCGACGAGCCGCTGATCGCCGTCGGCGACTTCACCGAGGACGGCGGCCGCCGGGCC
ATGCGGGAGCTGCTGGAGCGCCGCCCCGGGCTCGACGCGGTCTTCGCGGCCTCGGACGTGATGGCGGCGGGCGCCCGGCG
GGAGCTGCGCGCGGCCGGGCGCCGGATCCCGCAGGACGTGGCGCTGGTCGGCTTCGACGACTCGGTGGTGGCCCGGCACA
TGGACCCGCCGCTGACCAGCGTCCGGCAGCCGATCGAGGAGATGGGCCGGACCATGGCGCGCGTGCTGCTGGAGCGGATC
TCGGGGAAGCCGGGGGGCGGGGCGGCGGCCGTCGTGCTGCCGAACCGGCTGGTGGTCCGCGAATCGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.092

98.251

0.364
  cytR Vibrio parahaemolyticus RIMD 2210633

36.795

98.251

0.362