Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L6494_RS16755 Genome accession   NZ_CP091913
Coordinates   3989524..3991053 (+) Length   509 a.a.
NCBI ID   WP_237988841.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3984524..3996053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6494_RS16725 (L6494_16720) - 3985350..3985802 (+) 453 WP_237988836.1 helix-turn-helix domain-containing protein -
  L6494_RS16730 (L6494_16725) - 3986250..3986768 (-) 519 WP_237988837.1 DUF456 family protein -
  L6494_RS16735 (L6494_16730) - 3986891..3987169 (-) 279 WP_237988838.1 hypothetical protein -
  L6494_RS16740 (L6494_16735) - 3987175..3987681 (-) 507 WP_237988839.1 hypothetical protein -
  L6494_RS16745 (L6494_16740) - 3987881..3988522 (-) 642 WP_237988840.1 cofactor assembly of complex C subunit B -
  L6494_RS16750 (L6494_16745) - 3988618..3989346 (-) 729 WP_011318678.1 response regulator transcription factor -
  L6494_RS16755 (L6494_16750) radA 3989524..3991053 (+) 1530 WP_237988841.1 DNA repair protein RadA Machinery gene
  L6494_RS16760 (L6494_16755) - 3991176..3991889 (+) 714 WP_237996066.1 Uma2 family endonuclease -
  L6494_RS16765 (L6494_16760) - 3992222..3992917 (+) 696 Protein_3312 serine/threonine-protein kinase -
  L6494_RS16770 (L6494_16765) - 3992955..3994253 (-) 1299 WP_237995764.1 IS4 family transposase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 54765.67 Da        Isoelectric Point: 4.9321

>NTDB_id=654651 L6494_RS16755 WP_237988841.1 3989524..3991053(+) (radA) [Nostoc sp. UHCC 0870]
MAKPKTFYICNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDIPSRGVSAWHATQGNGKTGNKPKPAKARASLTFDQI
SDRQLTRWESGYEELDRVLGGGIVPGSMVLIGGDPGIGKSTLLLQVSNKLAQRYRILYVSGEESGQQVKLRASRLGVTNL
LNVVSDENSEAETAVTLAAVSPEGIGADLYVLPETDLEEILKEIDSLKPNVTVIDSIQTVFFPALTSAPGSVAQVRECTA
ALMKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVEHGLQQVLN
PSELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGIDYNRLVQILAVLEKRVGIPMSKLDSYVAS
AGGLNVGEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRAVSQMELRLKEAAKLGFKRAIIPKGQKFPDFDIEI
LQVSKVIDAIIAAIPHQELTDEDLDPDEE

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=654651 L6494_RS16755 WP_237988841.1 3989524..3991053(+) (radA) [Nostoc sp. UHCC 0870]
ATGGCAAAGCCTAAAACTTTTTACATTTGTAACGAATGTGGAGCAGAATCTCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
TGGTACTTACAACTCCCTAGAAGAACAAATTAGCATTCAGTCTTCAGTAGATATACCCAGCCGGGGAGTCAGTGCTTGGC
ACGCCACACAAGGTAATGGGAAAACTGGGAATAAACCAAAACCAGCAAAAGCCAGAGCTTCCTTAACATTTGACCAAATT
AGCGATCGCCAACTCACCCGTTGGGAGTCTGGTTATGAAGAATTGGATCGGGTGCTTGGGGGTGGAATAGTACCCGGCTC
TATGGTGCTAATTGGTGGTGATCCGGGTATTGGTAAATCTACTTTGCTATTACAAGTATCCAATAAATTGGCTCAGAGAT
ACCGCATTCTTTATGTTTCTGGGGAAGAATCAGGACAACAAGTTAAGTTAAGAGCTTCTCGCTTAGGAGTGACAAACCTG
CTCAATGTTGTTAGTGATGAAAATTCCGAAGCAGAAACAGCAGTAACATTGGCAGCAGTATCACCGGAAGGGATAGGTGC
AGATTTATACGTCTTGCCAGAAACAGACTTAGAAGAAATTTTGAAAGAGATAGATTCTCTCAAACCAAATGTAACAGTGA
TTGACAGTATTCAAACCGTATTTTTTCCGGCTTTAACTTCAGCACCTGGTTCAGTAGCTCAAGTCAGGGAATGTACGGCG
GCGTTGATGAAAGTGGCAAAACACGAAGACATCACAATGTTAATAGTGGGACACGTCACCAAAGAAGGGGCGATCGCCGG
GCCGAAAGTTTTAGAACACTTAGTAGATACGGTACTGTATTTTGAAGGCGATCGCTTCGCCTCCCATAGATTATTAAGGA
CAGTCAAAAACCGCTTCGGTGCAACCCACGAAATCGGCATCTTTGAAATGGTAGAACATGGGCTGCAACAAGTCCTCAAC
CCCAGCGAGTTATTTTTAGGTAATCGTGACGATCCCGCACCGGGTACAGCCATTGTTGTGGCTTGCGAAGGGACACGTCC
CATTGTCGTAGAATTGCAAGCTTTGGTAAGTCCTACAAGTTACCCCTCACCGCGTCGGGCTGGTACAGGTATAGATTATA
ACCGCTTAGTGCAGATTCTCGCCGTTTTAGAAAAGCGGGTGGGGATACCCATGTCCAAATTAGATTCCTACGTTGCGTCT
GCTGGGGGTTTAAATGTGGGAGAACCAGCCGTAGATTTAGGAATTGCCATTGCGATCGTTGCCAGTTTCCGCGATCGCAT
CGTTGATCCAGGTACAGTATTAATCGGTGAAGTCGGCTTAGGTGGACAGGTGCGAGCCGTTTCTCAGATGGAACTGAGGT
TAAAAGAAGCCGCTAAACTAGGATTTAAACGAGCGATTATTCCTAAAGGTCAAAAATTCCCCGACTTTGACATCGAAATT
TTACAAGTCTCCAAAGTCATAGATGCAATTATTGCCGCCATTCCCCATCAAGAACTGACAGACGAAGATTTAGATCCAGA
TGAAGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(409-469)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(90-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.707

97.25

0.493
  radA Streptococcus mitis SK321

45.639

96.857

0.442
  radA Streptococcus pneumoniae Rx1

47.335

92.141

0.436
  radA Streptococcus pneumoniae D39

47.335

92.141

0.436
  radA Streptococcus pneumoniae R6

47.335

92.141

0.436
  radA Streptococcus pneumoniae TIGR4

47.335

92.141

0.436
  radA Streptococcus mitis NCTC 12261

47.335

92.141

0.436