Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L6494_RS07120 Genome accession   NZ_CP091913
Coordinates   1603821..1605449 (+) Length   542 a.a.
NCBI ID   WP_237993068.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0870     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598821..1610449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6494_RS07105 (L6494_07100) - 1599854..1600471 (-) 618 WP_237993062.1 PEP-CTERM sorting domain-containing protein -
  L6494_RS07110 (L6494_07105) - 1601020..1602330 (+) 1311 WP_237993064.1 alkaline phosphatase PhoX -
  L6494_RS07115 (L6494_07110) - 1602422..1603591 (-) 1170 WP_237993066.1 cysteine desulfurase family protein -
  L6494_RS07120 (L6494_07115) comA 1603821..1605449 (+) 1629 WP_237993068.1 DUF655 domain-containing protein Machinery gene
  L6494_RS07125 (L6494_07120) - 1605632..1605877 (+) 246 WP_237993070.1 ChaB family protein -
  L6494_RS07130 (L6494_07125) - 1605989..1606183 (+) 195 WP_237993072.1 RNA-binding S4 domain-containing protein -
  L6494_RS07135 (L6494_07130) - 1606335..1607549 (+) 1215 WP_237993074.1 NAD(P)/FAD-dependent oxidoreductase -
  L6494_RS07140 (L6494_07135) - 1607656..1608306 (+) 651 WP_237993076.1 HAD family hydrolase -
  L6494_RS07145 (L6494_07140) - 1608314..1609393 (-) 1080 WP_237993078.1 hybrid sensor histidine kinase/response regulator -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 60842.30 Da        Isoelectric Point: 7.0176

>NTDB_id=654643 L6494_RS07120 WP_237993068.1 1603821..1605449(+) (comA) [Nostoc sp. UHCC 0870]
MQILPTLQKFSVLCLLLAIASCQRVQSQNTRLPALPQDPFVKVYFNQSESAEYREPYRQQNRLGDNLEQQIIDAISQAKS
TIDVAVQELRLPGIAQALSDKQKAGVKVRVILENNYSRPWSSFTAEEVKKLPLREKDRYLEYFKFVDQNQDNQLSQEEIN
QRDALSILQNTKIPWIDDKADGSAGSNLMHHKFVIVDNRIVIITSANFTLSDIHGDFTNPTSLGNPNNFLEIDSPEIATL
LTEEFNLMWGDGAGGKPDSKFGLKKPVRSPKTIILGDNKITVHFSPTSPSQPWSSTSNGLIGETLNSATKSVDMALFVFS
EQRLANILETRHQENVSIRALIDRQFAYRPYSEALDMMGVALSDKCKYELDNKPWKNPITTVGVPILPKGDLLHHKFAVV
DQQTVIAGSHNWSNAANHANDETLIIIENPTIAAHYVREFARLYTKAKIGVPENIQAKIQLEQKQCPQILSPNSSIDKLS
KLVNVNTASLEELTNLPGVGKKLAEKIIIARQQKKFTSLEDLEKVPGISNRMVTNWQGYIEL

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=654643 L6494_RS07120 WP_237993068.1 1603821..1605449(+) (comA) [Nostoc sp. UHCC 0870]
GTGCAGATTTTACCTACACTCCAGAAATTTTCGGTCTTGTGTTTGTTATTGGCGATCGCATCTTGTCAAAGAGTCCAGTC
TCAGAATACCCGTCTGCCTGCTCTCCCACAAGACCCATTTGTGAAAGTTTACTTTAATCAGTCTGAGTCTGCTGAATATC
GAGAACCTTACCGTCAGCAAAATCGATTGGGAGATAACTTAGAACAGCAGATTATTGATGCTATTTCCCAAGCTAAATCT
ACTATAGATGTAGCAGTACAAGAATTACGTTTACCGGGAATTGCCCAAGCTTTAAGCGATAAACAAAAAGCTGGGGTTAA
AGTCAGGGTGATTTTAGAAAATAATTATAGCCGTCCCTGGAGTAGTTTTACTGCTGAGGAAGTCAAGAAATTACCTCTCA
GAGAAAAAGACAGATATCTAGAATATTTTAAATTTGTAGACCAAAACCAAGATAATCAACTTAGCCAGGAAGAAATTAAC
CAAAGAGATGCTTTGAGCATTTTACAAAATACCAAAATCCCGTGGATAGATGACAAAGCAGATGGTTCAGCAGGTAGTAA
CTTGATGCACCATAAGTTTGTTATTGTAGATAATCGGATCGTGATTATTACTTCAGCTAATTTTACCTTGAGTGATATTC
ATGGAGATTTCACTAATCCCACCAGCTTAGGTAATCCTAATAACTTCTTAGAAATTGATAGCCCAGAGATAGCCACTTTA
TTGACAGAAGAGTTTAATCTTATGTGGGGTGATGGTGCAGGAGGTAAACCAGATAGTAAATTTGGTTTAAAGAAACCTGT
CCGTTCTCCTAAAACAATTATATTAGGCGACAACAAAATTACGGTACATTTTTCACCTACTTCACCTAGTCAACCTTGGA
GTAGTACCAGTAATGGTTTAATTGGTGAAACCTTAAATTCAGCTACTAAATCTGTTGATATGGCGTTATTTGTCTTTTCT
GAACAACGACTTGCCAATATTTTAGAAACTCGTCATCAAGAAAATGTATCGATTCGGGCTTTAATTGATAGACAATTCGC
CTATCGTCCTTACAGCGAAGCCCTAGATATGATGGGGGTAGCTTTAAGTGATAAATGTAAATATGAATTAGATAACAAGC
CTTGGAAAAATCCTATTACTACTGTTGGTGTACCTATATTACCTAAAGGGGATTTATTACATCATAAGTTTGCGGTAGTT
GATCAACAAACAGTAATTGCAGGTTCTCATAACTGGTCAAATGCAGCTAATCATGCTAATGATGAAACGTTAATCATAAT
TGAAAATCCTACCATTGCTGCTCATTATGTGCGGGAATTTGCACGTCTTTACACTAAAGCTAAAATTGGTGTGCCAGAAA
ATATCCAAGCCAAAATTCAATTAGAACAAAAACAATGTCCTCAGATTTTAAGCCCAAATTCAAGTATTGATAAACTAAGT
AAATTAGTAAACGTTAATACAGCTAGTTTAGAAGAATTAACAAATCTACCAGGGGTTGGTAAAAAGTTAGCCGAAAAAAT
TATCATTGCCCGTCAACAAAAGAAATTCACATCATTAGAAGATTTAGAAAAAGTTCCCGGCATAAGTAATAGAATGGTAA
CTAATTGGCAAGGTTATATTGAGTTATAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(71-249)

PLD-like domain (PLDc_2)

(303-443)

Helix-hairpin-helix motif (HHH_3)

(482-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.174

100

0.494