Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT93_RS28310 Genome accession   NZ_CP108130
Coordinates   6214514..6215299 (-) Length   261 a.a.
NCBI ID   WP_142213283.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6209514..6220299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS28295 (OHT93_28255) - 6209746..6210483 (+) 738 WP_406279843.1 GNAT family N-acetyltransferase -
  OHT93_RS28300 (OHT93_28260) - 6210559..6212376 (+) 1818 WP_406274626.1 IucA/IucC family protein -
  OHT93_RS28305 (OHT93_28265) - 6212426..6214420 (+) 1995 WP_406274628.1 ATP-dependent DNA helicase -
  OHT93_RS28310 (OHT93_28270) dinR/lexA 6214514..6215299 (-) 786 WP_142213283.1 transcriptional repressor LexA Regulator
  OHT93_RS28315 (OHT93_28275) nrdR 6215912..6216424 (+) 513 WP_266489153.1 transcriptional regulator NrdR -
  OHT93_RS28320 (OHT93_28280) - 6216599..6219496 (+) 2898 WP_406274632.1 vitamin B12-dependent ribonucleotide reductase -
  OHT93_RS28325 (OHT93_28285) - 6219574..6220095 (-) 522 WP_406274635.1 TerD family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28298.05 Da        Isoelectric Point: 8.0891

>NTDB_id=654610 OHT93_RS28310 WP_142213283.1 6214514..6215299(-) (dinR/lexA) [Streptomyces sp. NBC_00191]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=654610 OHT93_RS28310 WP_142213283.1 6214514..6215299(-) (dinR/lexA) [Streptomyces sp. NBC_00191]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACACCCGAGGGGCCCAAGCCCACGCGTTCGCTGCCCGGCCGACCTCCAGGGATCCGAGCCGACAGCT
CCGGTCTCACGGATCGGCAGCGGCGCGTCATCGAGGTGATCCGTGACTCCGTACAGCGTCGGGGATACCCGCCGTCGATG
CGTGAGATCGGCCAGGCGGTCGGGCTGTCCAGCACTTCTTCCGTGGCACACCAGCTCATGGCTCTGGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCAGGGCGTACGAGGTGCGCGGCTCCGACCAGCCCAGCACACAGCCGACGGACACGA
CCGGCAAGCCCGCCGCCTCGTATGTGCCGCTCGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCCGAAGAGTCCGTC
GAGGACGTCTTCCCGCTGCCCCGCCAGCTCGTGGGTGACGGCGAGTTGTTCGTGCTCAAGGTCGTCGGCGACTCGATGAT
CGAGGCCGCGATCTGCGACGGCGACTGGGTGACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCGA
TGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGAACGGCCATGTGTGGCTCCTCCCGCACAACGCGGCGTAC
CAGCCGATTCCGGGTGATGAGGCGACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372