Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TF3313_RS13865 Genome accession   NZ_AP013044
Coordinates   3316808..3318178 (+) Length   456 a.a.
NCBI ID   WP_060828498.1    Uniprot ID   -
Organism   Tannerella forsythia 3313     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3311808..3323178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TF3313_RS13835 (TF3313_2919) - 3311827..3312342 (-) 516 WP_060828494.1 HAD hydrolase family protein -
  TF3313_RS13840 (TF3313_2920) - 3312348..3313112 (-) 765 WP_060828495.1 Rossmann-like and DUF2520 domain-containing protein -
  TF3313_RS13845 (TF3313_2921) - 3313109..3313672 (-) 564 WP_060828496.1 nitroreductase family protein -
  TF3313_RS13850 - 3313974..3315062 (-) 1089 WP_060828497.1 aminoglycoside phosphotransferase family protein -
  TF3313_RS13855 - 3315141..3315395 (-) 255 WP_041590973.1 type B 50S ribosomal protein L31 -
  TF3313_RS13860 (TF3313_2923) - 3315619..3316614 (+) 996 WP_041590974.1 class II fructose-bisphosphate aldolase -
  TF3313_RS13865 (TF3313_2924) radA 3316808..3318178 (+) 1371 WP_060828498.1 DNA repair protein RadA Machinery gene
  TF3313_RS13870 (TF3313_2925) - 3318244..3318540 (+) 297 WP_060828499.1 nucleotidyltransferase domain-containing protein -
  TF3313_RS13875 (TF3313_2926) - 3318524..3318868 (+) 345 WP_014226396.1 DUF86 domain-containing protein -
  TF3313_RS15390 - 3318888..3319055 (+) 168 Protein_2739 DNA repair protein RadA -
  TF3313_RS13880 (TF3313_2928) - 3319164..3320303 (+) 1140 WP_060828500.1 hypothetical protein -
  TF3313_RS13885 (TF3313_2929) - 3320389..3321975 (+) 1587 WP_060828501.1 FAD-dependent protein -
  TF3313_RS14905 (TF3313_2930) - 3321966..3322151 (-) 186 WP_155642493.1 hypothetical protein -
  TF3313_RS14910 - 3322172..3322318 (-) 147 WP_155642494.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49973.80 Da        Isoelectric Point: 7.3630

>NTDB_id=65461 TF3313_RS13865 WP_060828498.1 3316808..3318178(+) (radA) [Tannerella forsythia 3313]
MAKVKSVYICSDCGAESPKWVGKCPSCGAWNTYVEELVKKEPAAWRSVPGIVHEGMKPRLLRDVTAKEETRIDMHDAELN
RVLGGGLVKGSLVLVGGEPGIGKSTLVLQTVLQMKDLHTLYVSGEESAQQLKMRADRLAGKDTNMGNCHVYCETNLEQVF
VQAQNLQPDLLIIDSIQTIFTDRAESSPGSITQVRECSAAVLKFAKETGTPVLMIGHINKEGSIAGPKVLEHIVDTVLQF
EGDQHYMYRILRSIKNRFGSTSELGIYEMRQSGLRQVENPSELLLTEGHEGLSGVAIAAAMEGARPFLIETQSLVSSAVY
GTPQRSATGFDLRRMNMLLAVLEKRAGFKLVQKDVFLNIAGGLRVSDPAIDLPVISAVLSSSLDIPTDRSTCMAGEVGLS
GEIRPVNRIEQRIQEAGKLGFTRMIVPQMKGLEALKSKMKIFQVRKVEEAFRELFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=65461 TF3313_RS13865 WP_060828498.1 3316808..3318178(+) (radA) [Tannerella forsythia 3313]
ATGGCTAAAGTTAAATCGGTATATATCTGTTCCGACTGCGGTGCCGAATCGCCCAAGTGGGTCGGCAAATGTCCGTCGTG
CGGCGCGTGGAACACCTATGTAGAAGAACTTGTAAAGAAAGAACCTGCTGCATGGCGGTCTGTTCCGGGAATCGTACATG
AAGGCATGAAGCCCCGGCTGCTGCGCGACGTCACGGCAAAAGAAGAAACACGTATCGATATGCACGATGCGGAGTTGAAC
CGTGTGTTAGGCGGCGGGTTAGTCAAAGGTTCGCTGGTACTTGTCGGGGGAGAGCCGGGCATCGGAAAATCTACGCTGGT
ATTGCAAACCGTTTTGCAGATGAAAGATTTGCATACGCTCTACGTTTCGGGCGAAGAGAGCGCTCAACAGTTAAAGATGC
GTGCCGACCGTCTGGCCGGAAAAGACACCAATATGGGCAATTGCCATGTGTATTGCGAAACGAATCTCGAACAGGTTTTC
GTACAGGCGCAGAACCTCCAACCCGATCTCTTGATCATCGATTCCATCCAGACGATATTTACCGACCGGGCCGAATCGTC
GCCGGGCAGCATCACTCAGGTGCGCGAGTGCAGCGCAGCCGTGCTGAAGTTTGCCAAAGAGACGGGAACGCCCGTGCTGA
TGATCGGACATATCAATAAGGAAGGCAGCATAGCCGGGCCGAAGGTACTCGAACACATTGTCGATACGGTATTGCAGTTC
GAGGGCGACCAGCACTACATGTATCGCATCCTGCGGAGTATCAAGAACCGTTTCGGAAGCACTTCCGAGTTAGGCATCTA
TGAGATGCGGCAGAGCGGATTGCGGCAGGTCGAGAATCCCTCCGAACTGCTTCTGACCGAAGGTCACGAGGGGCTTAGCG
GCGTAGCCATCGCGGCAGCAATGGAGGGTGCCCGTCCTTTCCTGATCGAGACGCAGTCGCTCGTCAGCAGCGCTGTATAC
GGGACGCCTCAGCGCAGTGCGACGGGGTTCGACCTCCGGCGGATGAATATGTTGCTGGCCGTGCTGGAAAAACGCGCCGG
CTTTAAACTCGTACAGAAAGATGTTTTCCTGAACATCGCAGGAGGGCTGCGTGTAAGCGATCCGGCCATCGACCTGCCGG
TGATCAGCGCCGTATTATCGTCGAGTTTGGATATCCCGACCGATCGCAGCACGTGCATGGCGGGCGAAGTGGGGCTTTCG
GGCGAGATACGTCCGGTCAACCGTATCGAACAACGCATTCAGGAAGCCGGAAAGCTCGGATTCACACGCATGATCGTTCC
GCAGATGAAAGGATTGGAAGCGTTGAAAAGCAAGATGAAAATCTTTCAGGTCAGAAAAGTAGAAGAAGCCTTCCGGGAGT
TATTCGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.87

100

0.513
  radA Streptococcus mitis SK321

48.035

100

0.482
  radA Streptococcus pneumoniae D39

47.817

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.817

100

0.48
  radA Streptococcus mitis NCTC 12261

47.817

100

0.48
  radA Streptococcus pneumoniae R6

47.817

100

0.48
  radA Streptococcus pneumoniae Rx1

47.817

100

0.48

Multiple sequence alignment