Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHT93_RS21460 Genome accession   NZ_CP108130
Coordinates   4717077..4718513 (-) Length   478 a.a.
NCBI ID   WP_406271658.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4712077..4723513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS21435 (OHT93_21385) - 4712383..4713054 (-) 672 WP_406271652.1 hypothetical protein -
  OHT93_RS21440 (OHT93_21390) - 4713042..4713614 (-) 573 WP_266481599.1 SigE family RNA polymerase sigma factor -
  OHT93_RS21445 (OHT93_21395) - 4713857..4714774 (-) 918 WP_406279657.1 A/G-specific adenine glycosylase -
  OHT93_RS21450 (OHT93_21400) - 4714948..4715760 (+) 813 WP_406271655.1 hypothetical protein -
  OHT93_RS21455 (OHT93_21405) disA 4715851..4716975 (-) 1125 WP_266479620.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHT93_RS21460 (OHT93_21410) radA/sms 4717077..4718513 (-) 1437 WP_406271658.1 DNA repair protein RadA Machinery gene
  OHT93_RS21465 (OHT93_21415) - 4718695..4720422 (+) 1728 WP_406271661.1 BACON domain-containing protein -
  OHT93_RS21470 (OHT93_21420) - 4720447..4721298 (-) 852 WP_406271664.1 hypothetical protein -
  OHT93_RS21475 (OHT93_21425) - 4721339..4722271 (+) 933 WP_324990642.1 Ppx/GppA phosphatase family protein -
  OHT93_RS21480 (OHT93_21430) - 4722295..4723125 (+) 831 WP_266479607.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 50234.29 Da        Isoelectric Point: 8.2604

>NTDB_id=654592 OHT93_RS21460 WP_406271658.1 4717077..4718513(-) (radA/sms) [Streptomyces sp. NBC_00191]
MAAARTKSAKDRPSYRCTDCGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAAGRVSTAALPIGQVDGRQATARSTGVAE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRINALHDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPAGMKVTEVADMGDALRVLPRGRRTAPDNGSERRSDRASERGQ

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=654592 OHT93_RS21460 WP_406271658.1 4717077..4718513(-) (radA/sms) [Streptomyces sp. NBC_00191]
ATGGCTGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGCCAAGTG
GCTCGGCCGCTGCCCTGAATGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCACCCGCTGTCCGTACGACCGCCGCAG
GGCGCGTCTCCACCGCCGCGCTCCCCATCGGCCAGGTCGACGGCCGGCAGGCGACCGCCCGCTCCACCGGTGTGGCCGAG
CTGGACCGCGTCCTCGGCGGCGGCCTCGTGCCGGGAGCCGTCGTGCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCCAC
GCTGCTCCTCGACGTCGCCGCCAAGGCCGCGAGCGACGAACACCGCACCCTGTATGTCACCGGCGAGGAGTCCGCGAGCC
AGGTCCGCCTGCGAGCCGACCGGATCAACGCGCTGCACGACCACCTGTATCTCGCCGCCGAGACCGATCTCTCCGCCGTC
CTCGGCCACTTGGACGCGGTCAAGCCCTCGCTGCTGGTCCTCGACTCCGTACAGACCGTCGCATCACCCGAGATCGACGG
TGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCGGGCGCACTGATCCGCGCCTCCAAGGAGCGGGGCATGTCCACGC
TCCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGACCGCGGCTCCTCGAGCATCTGGTGGACGTCGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGCCTCCGTCTCGTACGAGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCGGGCCTCTTCCTCACCCGCCGCGCGGAGGCCGTCC
CCGGCACGTGCCTGACGGTCACCCTCGAAGGCCGCCGCCCTCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACAACCTCGGGCCTGGAGACCTCACGGGTGTCGATGATGCTGGCCGTACTGGAACAGCGCGG
CCGGATCACCGCGCTGGGCAAACGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCGGCGGACC
TCGCGATCGCGCTCGCCCTGGCGTCGGCGGCCAGCGACACCCCACTGCCCAAGAATCTGGTCGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTGACGGGCGTCCAGCGAAGGCTCGCCGAGGCGCACCGGCTCGGCTTCACGCATGCCCT
TGTCCCCACCGATCCGGGCAAGATCCCTGCGGGTATGAAGGTCACGGAAGTGGCCGACATGGGGGACGCTCTCAGGGTGC
TCCCGCGCGGTCGCCGGACGGCTCCCGACAACGGTTCCGAAAGGCGCTCCGACAGAGCTTCCGAAAGGGGTCAGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-42)

AAA domain (AAA_25)

(83-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.15

94.77

0.418
  radA Streptococcus pneumoniae Rx1

42.478

94.561

0.402
  radA Streptococcus pneumoniae D39

42.478

94.561

0.402
  radA Streptococcus pneumoniae R6

42.478

94.561

0.402
  radA Streptococcus pneumoniae TIGR4

42.478

94.561

0.402
  radA Streptococcus mitis SK321

43.925

89.54

0.393
  radA Streptococcus mitis NCTC 12261

43.925

89.54

0.393