Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L5I20_RS10380 Genome accession   NZ_CP091904
Coordinates   2085545..2087218 (-) Length   557 a.a.
NCBI ID   WP_002385088.1    Uniprot ID   -
Organism   Enterococcus faecalis strain 43-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2080545..2092218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5I20_RS10350 (L5I20_10350) ftsL 2081559..2081966 (-) 408 WP_002385090.1 cell division protein FtsL -
  L5I20_RS10355 (L5I20_10355) rsmH 2081983..2082939 (-) 957 WP_010774092.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  L5I20_RS10360 (L5I20_10360) mraZ 2082954..2083439 (-) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  L5I20_RS10365 (L5I20_10365) - 2083674..2084066 (-) 393 WP_002383401.1 DUF3397 domain-containing protein -
  L5I20_RS10370 (L5I20_10370) - 2084311..2085276 (+) 966 WP_002383400.1 magnesium transporter CorA family protein -
  L5I20_RS10375 (L5I20_10375) - 2085344..2085454 (+) 111 WP_002383399.1 DUF4044 domain-containing protein -
  L5I20_RS10380 (L5I20_10380) recN 2085545..2087218 (-) 1674 WP_002385088.1 DNA repair protein RecN Machinery gene
  L5I20_RS10385 (L5I20_10385) - 2087236..2087685 (-) 450 WP_002385087.1 arginine repressor -
  L5I20_RS10390 (L5I20_10390) - 2087824..2088639 (-) 816 WP_002385086.1 TlyA family RNA methyltransferase -
  L5I20_RS10395 (L5I20_10395) - 2088653..2089534 (-) 882 WP_002371528.1 polyprenyl synthetase family protein -
  L5I20_RS10400 (L5I20_10400) - 2089534..2089764 (-) 231 WP_002364628.1 exodeoxyribonuclease VII small subunit -
  L5I20_RS10405 (L5I20_10405) xseA 2089766..2091112 (-) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  L5I20_RS10410 (L5I20_10410) - 2091122..2091967 (-) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62641.04 Da        Isoelectric Point: 4.5772

>NTDB_id=654588 L5I20_RS10380 WP_002385088.1 2085545..2087218(-) (recN) [Enterococcus faecalis strain 43-2]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKQLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTRAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRVLSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=654588 L5I20_RS10380 WP_002385088.1 2085545..2087218(-) (recN) [Enterococcus faecalis strain 43-2]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGTGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGCAATTATTA
GAAGAATTAGGGATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGAATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAATGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACGGGCATATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGC
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGGGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTATTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGTGATTCG
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAGTTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.691

100

0.501