Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT93_RS20135 Genome accession   NZ_CP108130
Coordinates   4443306..4443521 (+) Length   71 a.a.
NCBI ID   WP_405600126.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4438306..4448521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS20110 (OHT93_20060) - 4439041..4440102 (-) 1062 WP_406271051.1 hypothetical protein -
  OHT93_RS20115 (OHT93_20065) - 4440214..4440798 (-) 585 WP_406271054.1 TIGR03086 family metal-binding protein -
  OHT93_RS20120 (OHT93_20070) - 4441091..4442011 (-) 921 WP_406271057.1 helix-turn-helix domain-containing protein -
  OHT93_RS20125 (OHT93_20075) - 4442419..4442889 (-) 471 WP_406271060.1 hypothetical protein -
  OHT93_RS20130 (OHT93_20080) - 4443071..4443370 (+) 300 WP_406280133.1 hypothetical protein -
  OHT93_RS20135 (OHT93_20085) dinR/lexA 4443306..4443521 (+) 216 WP_405600126.1 LexA family protein Regulator
  OHT93_RS20140 (OHT93_20090) - 4443614..4444390 (-) 777 WP_406271063.1 DUF72 domain-containing protein -
  OHT93_RS20145 (OHT93_20095) - 4444475..4445299 (-) 825 WP_406271066.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OHT93_RS20150 (OHT93_20100) - 4445432..4447462 (-) 2031 WP_406271069.1 PA14 domain-containing protein -
  OHT93_RS20155 (OHT93_20105) - 4447745..4447870 (+) 126 Protein_3968 cation transporter -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 8031.10 Da        Isoelectric Point: 9.4763

>NTDB_id=654584 OHT93_RS20135 WP_405600126.1 4443306..4443521(+) (dinR/lexA) [Streptomyces sp. NBC_00191]
MVDRLSARQESILRCITEWIAEHGEAPTIREIGESVGLSSTSSVAYQLRRLEQAGLISRSRRSWRSCRIGN

Nucleotide


Download         Length: 216 bp        

>NTDB_id=654584 OHT93_RS20135 WP_405600126.1 4443306..4443521(+) (dinR/lexA) [Streptomyces sp. NBC_00191]
GTGGTCGATCGCCTGAGCGCGCGGCAGGAGAGCATTCTGCGGTGCATCACGGAGTGGATAGCTGAACACGGCGAGGCCCC
GACGATCCGGGAGATCGGTGAGAGTGTCGGCCTGTCGAGCACGTCGTCGGTGGCCTACCAGCTCCGCCGGTTGGAACAGG
CCGGGCTGATCAGCCGCAGCCGCCGGAGCTGGCGCTCCTGCCGCATCGGCAACTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.97

92.958

0.437