Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT93_RS12155 Genome accession   NZ_CP108130
Coordinates   2677708..2679630 (+) Length   640 a.a.
NCBI ID   WP_406267562.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2672708..2684630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS12140 (OHT93_12105) - 2674105..2674404 (+) 300 WP_266476598.1 YtxH domain-containing protein -
  OHT93_RS12145 (OHT93_12110) - 2674441..2675886 (+) 1446 WP_406267556.1 FGGY family carbohydrate kinase -
  OHT93_RS12150 (OHT93_12115) rcrP 2675978..2677711 (+) 1734 WP_406267559.1 ABC transporter ATP-binding protein Regulator
  OHT93_RS12155 (OHT93_12120) rcrQ 2677708..2679630 (+) 1923 WP_406267562.1 ABC transporter ATP-binding protein Regulator
  OHT93_RS12160 (OHT93_12125) - 2679883..2681133 (-) 1251 Protein_2410 RNA polymerase sigma factor -
  OHT93_RS12165 (OHT93_12130) dnaG 2681240..2683144 (-) 1905 WP_406267565.1 DNA primase -
  OHT93_RS12170 (OHT93_12135) - 2683180..2684442 (-) 1263 WP_406267567.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69399.67 Da        Isoelectric Point: 5.0596

>NTDB_id=654568 OHT93_RS12155 WP_406267562.1 2677708..2679630(+) (rcrQ) [Streptomyces sp. NBC_00191]
MSGPGGRMMMGPVERSMDFKGSGKRLLRQLAPERMTLWVMLAAAVLSVAFNVVGPWILGRATDLVFAGVVGRDMDAGTSK
EQAIEGLRDKDQGGLADLLSGVDFTPGDGIDFTAVGHVLLAALAVYVAAGLLMLVATRLSIRVINRTLYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVVVATKVGKRS
QPHFVQQWKTTGKLNAHIEEMYTGHALVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAPSAERPERPQGRVSLEKV
AFRYEPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRISLDGVDVARMSREELRSQIGMVLQDTWL
FGGTIADNIAYGASREVTHEEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGTHEGLLAAEGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=654568 OHT93_RS12155 WP_406267562.1 2677708..2679630(+) (rcrQ) [Streptomyces sp. NBC_00191]
ATGAGCGGGCCGGGCGGACGGATGATGATGGGCCCCGTCGAGCGGTCCATGGACTTCAAGGGTTCGGGCAAACGGCTGCT
GCGGCAGCTCGCGCCGGAGCGTATGACGCTGTGGGTGATGCTCGCGGCGGCCGTGCTGAGCGTCGCGTTCAACGTGGTCG
GTCCGTGGATTCTGGGCCGGGCGACCGACCTGGTCTTCGCCGGGGTCGTCGGCCGTGACATGGACGCGGGGACCAGCAAG
GAACAGGCGATCGAGGGCCTGCGGGACAAGGACCAGGGCGGGCTCGCGGACCTGCTGTCCGGCGTGGACTTCACGCCCGG
CGACGGCATCGACTTCACGGCCGTCGGCCATGTGCTGCTGGCGGCGCTCGCGGTGTACGTGGCCGCGGGGCTGCTGATGC
TGGTGGCGACCCGGCTGTCGATCCGGGTGATCAACCGGACCCTGTACCGGATGCGTGAGGACGTACAGGCGAAGCTGTCG
CGGCTGCCACTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACATCTC
GCAGACCCTGCAGCAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTGGGCGTGCTGGCGATGATGTTCTGGA
TCTCACCGCTGCTCGCGCTGGTGGCACTGGTGACCGTGCCGGTGTCGGTTGTCGTCGCGACGAAGGTCGGCAAGCGCTCG
CAGCCGCACTTCGTGCAGCAGTGGAAGACCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGTCATGCGCT
GGTGAAGGTCTTCGGGCGGCAGGACGAGTCCGCCAGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGGGATTCA
AGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTATGTGCTGGTGGCCGTGGTC
GGCGGGCTGCGGGTCGCCTCCGGCGCGCTGTCGATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTCCTCG
ACGCGGAGGAGCAGGAGGCGGACGCGCCGTCCGCCGAGCGGCCCGAACGCCCGCAGGGCCGGGTCTCCCTGGAGAAGGTC
GCCTTCCGCTACGAGCCGGACAAGCCGCTCATCGAGGATCTGTCGCTGAGCGTGGAGCCGGGTCACACGGTCGCGATCGT
CGGCCCGACGGGCGCGGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCAGCC
TGGACGGGGTCGACGTCGCCAGGATGTCCCGCGAGGAACTGCGGTCCCAGATCGGGATGGTGCTCCAGGACACGTGGCTG
TTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCCTCCCGGGAGGTGACCCACGAGGAGATCGAGGAGGCGGCGCG
CGCCGCGCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGATGAGGGCTCGGGCGTGA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAGGCGACC
AGCTCGGTGGACACCCGTACGGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCCCACGGCCGCACGAGCTTCGTCAT
CGCGCACCGGCTGTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGGGCGATCGTCGAACAGGGCACGC
ATGAGGGGCTGTTGGCGGCGGAGGGGGCGTATGCGCGGCTGTACGCGGCGCAGTTCGCCCAAGCGGTTGTGGAGGTGGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(38-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.194

96.406

0.387