Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT93_RS12150 Genome accession   NZ_CP108130
Coordinates   2675978..2677711 (+) Length   577 a.a.
NCBI ID   WP_406267559.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00191     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2670978..2682711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT93_RS12110 (OHT93_12075) - 2671413..2672294 (-) 882 WP_406267553.1 NAD(P)-dependent oxidoreductase -
  OHT93_RS12115 (OHT93_12080) - 2672391..2672675 (+) 285 Protein_2404 winged helix-turn-helix transcriptional regulator -
  OHT93_RS12120 (OHT93_12085) - 2672680..2672859 (-) 180 Protein_2405 IS5/IS1182 family transposase -
  OHT93_RS12140 (OHT93_12105) - 2674105..2674404 (+) 300 WP_266476598.1 YtxH domain-containing protein -
  OHT93_RS12145 (OHT93_12110) - 2674441..2675886 (+) 1446 WP_406267556.1 FGGY family carbohydrate kinase -
  OHT93_RS12150 (OHT93_12115) rcrP 2675978..2677711 (+) 1734 WP_406267559.1 ABC transporter ATP-binding protein Regulator
  OHT93_RS12155 (OHT93_12120) rcrQ 2677708..2679630 (+) 1923 WP_406267562.1 ABC transporter ATP-binding protein Regulator
  OHT93_RS12160 (OHT93_12125) - 2679883..2681133 (-) 1251 Protein_2410 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62642.72 Da        Isoelectric Point: 5.5539

>NTDB_id=654567 OHT93_RS12150 WP_406267559.1 2675978..2677711(+) (rcrP) [Streptomyces sp. NBC_00191]
MLIRLLRTHLGPYRQPITLLVVLQLLQTSATLYLPTLNADIIDNGVVKGNTGYILRLGALMIAVSVVQVLCNIGAVYIGA
QTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEAGRFRGANNELTDVSLSTGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVIP
PIKAVRELRRHGHLEVRDVEFRYPGAEESVLRDVTLLARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
DLDPALMAKTVGLVPQRPYLFSGTVATNLRYGKPDASDEELWQALEVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALARETSEATVVIVAQRVSTIRDADRIVVLDEGQVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654567 OHT93_RS12150 WP_406267559.1 2675978..2677711(+) (rcrP) [Streptomyces sp. NBC_00191]
GTGCTGATACGACTACTGCGGACGCATTTGGGTCCGTACAGACAACCGATCACCCTCCTTGTGGTGCTGCAGCTGCTGCA
GACCAGCGCCACCCTTTATCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTGGTGAAGGGGAACACGGGCTACA
TCCTGCGGCTCGGCGCGCTCATGATCGCGGTGAGCGTCGTCCAGGTGCTCTGCAACATCGGAGCTGTCTATATCGGCGCG
CAGACCGCCGCCGCGCTCGGGCGTGACGTCCGGGCCGCTGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGGTCGG
CCACTTCGGCGCACCCTCCCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTCCCGCTGTCGGCGGTT
CTGCTCGCGGTGGTGCCGGTGCTGGGCATCGCCGTCTCGCTGATCGTCAAGAAGATGCGGCCGCTGTTTCGGACCATGCA
GGAGCGTCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTACGCGACG
AGTACGAGGCCGGGCGCTTCCGCGGCGCCAACAACGAGCTGACCGATGTGTCCCTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCCGTCGCCGTCGTCTGGTTCGGCGCGCACCGGGTCGACAGCGG
CGCGATCCAGATCGGCGCCCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAACGGATCGAGGAGGTGCTGGACACTCGCTCGAGCGTGATCCCG
CCGATCAAGGCCGTACGGGAGCTGCGCCGCCACGGGCATCTGGAGGTGCGGGACGTGGAGTTCCGCTATCCGGGGGCCGA
GGAGTCGGTGCTGCGCGATGTCACCCTGCTGGCCCGGCCCGGCGAGACCACCGCGATCATCGGGTCGACGGGCAGCGGAA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGGGAGGTGCTCGTCGACGGGGTCGATGTGCGT
GACCTCGATCCGGCGCTGATGGCGAAGACGGTGGGGCTCGTGCCCCAGAGGCCGTATCTGTTCTCCGGGACCGTGGCCAC
CAATCTGCGCTACGGGAAGCCCGACGCGAGCGACGAGGAACTGTGGCAGGCGCTGGAAGTGGCGCAGGCGGCCGACTTCG
TACGAGAACTCGAAGGCGGGCTGAACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGCCTG
GCGATCGCGCGGACCCTGGTGCAGCGTCCGGAGATCTATCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCCACGGA
CGCGGCGCTGCGAGGCGCGCTCGCCCGCGAGACCTCCGAGGCGACGGTGGTGATAGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGCATCGTGGTCCTGGACGAGGGGCAGGTCGTGGGGACCGGAAGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGAGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411