Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU08_RS35130 Genome accession   NZ_CP108128
Coordinates   8026754..8027746 (-) Length   330 a.a.
NCBI ID   WP_164369114.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8021754..8032746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS35105 (OHU08_35065) - 8022691..8023029 (-) 339 WP_266850573.1 cyclic-phosphate processing receiver domain-containing protein -
  OHU08_RS35110 (OHU08_35070) - 8023410..8023970 (+) 561 WP_406379733.1 SMI1/KNR4 family protein -
  OHU08_RS35115 (OHU08_35075) - 8024113..8024526 (-) 414 WP_164369115.1 SHOCT domain-containing protein -
  OHU08_RS35120 (OHU08_35080) - 8024686..8026059 (-) 1374 WP_351496115.1 DUF2252 domain-containing protein -
  OHU08_RS35125 (OHU08_35085) - 8026352..8026723 (+) 372 WP_326841676.1 amphi-Trp domain-containing protein -
  OHU08_RS35130 (OHU08_35090) cytR 8026754..8027746 (-) 993 WP_164369114.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU08_RS35135 (OHU08_35095) - 8028075..8029796 (+) 1722 WP_406379736.1 discoidin domain-containing protein -
  OHU08_RS35140 (OHU08_35100) - 8029941..8031311 (+) 1371 WP_404124765.1 DUF1996 domain-containing protein -
  OHU08_RS35145 (OHU08_35105) - 8031323..8031898 (+) 576 WP_406379738.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35225.21 Da        Isoelectric Point: 7.2042

>NTDB_id=654543 OHU08_RS35130 WP_164369114.1 8026754..8027746(-) (cytR) [Streptomyces sp. NBC_00197]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVHELGYVPNGAARNLVTRRTDTLALVVSDPPQGVVSDDP
LFSAVVRAVSRELEVAGKRLVLMLAESDQSRTRVEQYVAGGHVDGVLLVALHGTDPLPSALARQGLPVVSFNRTSAHDVP
YVALDNAGGAALAVRHLLDRGRRRISTITGPLELHEARERLDGYRRTLRDTGRRSIVALGDFTRVSGAEAMRQLLDDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVVGFDDIEAASYTTPALTSVRSPMADQATAAVHLLLGLIGGGPSKPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=654543 OHU08_RS35130 WP_164369114.1 8026754..8027746(-) (cytR) [Streptomyces sp. NBC_00197]
ATGAAGCGCCCCACTCTCGAAGTGGTCGCCGCCCGGGCCGGCGTGTCCAAATCGAGCGTTTCCCGCGTCATCAACGGCGA
GACGACCGTTGCCCCACAGATCCGAGACGTCGTGATGCGCGCTGTCCACGAACTCGGGTACGTGCCCAACGGAGCAGCAC
GCAACCTCGTCACGCGTCGCACCGACACCCTCGCCCTGGTGGTCTCCGACCCGCCGCAAGGCGTCGTGTCCGACGACCCC
CTCTTCTCGGCCGTCGTGCGCGCGGTCAGCCGAGAACTGGAAGTCGCCGGCAAGCGGCTCGTGCTCATGCTCGCGGAATC
GGACCAGAGTCGTACCAGAGTGGAGCAGTACGTCGCCGGCGGGCACGTGGACGGCGTCCTCCTCGTCGCCCTGCACGGTA
CGGATCCGCTGCCCTCAGCACTGGCCCGGCAGGGCCTGCCCGTCGTCTCCTTCAACCGCACCTCAGCACACGACGTCCCC
TACGTGGCCCTGGACAATGCCGGTGGGGCAGCGCTGGCGGTCCGTCACCTTCTCGACCGTGGCCGCCGCCGTATCTCGAC
CATCACCGGACCGCTCGAACTGCACGAGGCGCGGGAACGCCTCGACGGCTACCGCCGTACGCTCCGCGACACCGGCCGTC
GCTCCATCGTGGCCCTGGGCGACTTCACCAGGGTCTCCGGCGCCGAAGCCATGCGTCAGCTCCTGGATGACGATCCCGAC
CTCGACGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGAGCCCTTCGCACCCTCCACCAAGCCGGACGCCGCGTCCC
CGAGGACGTCGCCGTCGTCGGCTTCGACGACATAGAGGCCGCGTCCTACACGACCCCCGCCCTCACCTCGGTCCGCAGTC
CCATGGCCGACCAGGCAACCGCCGCCGTCCACCTGCTCCTCGGCCTCATCGGCGGCGGCCCCTCGAAGCCGGTGATCATG
CCGAACGAGCTGGTGGTGCGTGAATCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361