Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHU08_RS35045 Genome accession   NZ_CP108128
Coordinates   8009064..8010080 (+) Length   338 a.a.
NCBI ID   WP_351499205.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8004064..8015080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS35030 (OHU08_34990) - 8005400..8006341 (-) 942 WP_266618199.1 carbohydrate ABC transporter permease -
  OHU08_RS35035 (OHU08_34995) - 8006355..8007350 (-) 996 WP_385444377.1 carbohydrate ABC transporter permease -
  OHU08_RS35040 (OHU08_35000) - 8007465..8008778 (-) 1314 WP_164372322.1 ABC transporter substrate-binding protein -
  OHU08_RS35045 (OHU08_35005) cytR 8009064..8010080 (+) 1017 WP_351499205.1 LacI family DNA-binding transcriptional regulator Regulator
  OHU08_RS35050 (OHU08_35010) - 8010436..8011419 (+) 984 WP_406379726.1 TDT family transporter -
  OHU08_RS35055 (OHU08_35015) - 8012119..8013222 (+) 1104 WP_406379728.1 sugar ABC transporter substrate-binding protein -
  OHU08_RS35060 (OHU08_35020) - 8013335..8014111 (+) 777 WP_266850582.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36083.81 Da        Isoelectric Point: 5.4688

>NTDB_id=654542 OHU08_RS35045 WP_351499205.1 8009064..8010080(+) (cytR) [Streptomyces sp. NBC_00197]
MGGRQRPTIKTVAARAGVGRTTVSRVINGSELVSEKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAETRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPEE
SLSHVHSDNAGGAAAAVEHLLGRGRRTIGTISGPLDMDVARSRLQGWRETLEKAGREVPEGLVASSDFTEEGGGAAMRSL
LEQVPALDAVFVASDVMAAGALAELRRQGRRVPDDVAVVGFDDSIIARHTHPPLTSVRQPVEEIGSTIARILLAEIDDPE
EPRRHIVLSTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=654542 OHU08_RS35045 WP_351499205.1 8009064..8010080(+) (cytR) [Streptomyces sp. NBC_00197]
ATGGGGGGCAGGCAACGCCCGACCATCAAGACCGTGGCCGCCCGCGCCGGCGTCGGACGCACCACGGTTTCACGAGTCAT
CAACGGCTCCGAACTCGTCAGCGAGAAGGCGAGGGCCGCCGTGCTCGCCGCCATCGCCGAACTGAACTACGTCCCGAACT
CGGTCGCCCGGGGACTGGTGACGAGCCGGACCAACTCCGTTGCCCTGGTCATTCCCGAGTCGGAGAGCCGACTGGGCTCC
GAGCCCTACTTCTCGGCAGTCATCCGCGGGGTCAGCACCGCGCTGGCGGAGACCCGGACGCAACTGCAACTCGTCCTCGT
ACGCGATCAGGCCGAACGGGACCAGCTCACCGAGTCGGTGGCCGAGCGACGGGTGGACGGTGTACTCCTCGTCTCGGTGC
ACGAACACGATCCGCTGCCGGGGCTGCTGGAGGACATGGGCCTGCCCACGGTGCTCGCCGGGCGCCGTTCGCCCGAGGAG
TCGCTCAGCCACGTGCACTCCGACAACGCGGGCGGAGCCGCGGCCGCCGTCGAGCACCTGCTCGGCCGGGGACGCCGGAC
GATCGGCACGATCAGCGGGCCCCTGGACATGGACGTGGCCCGTAGCCGGCTCCAGGGGTGGCGCGAAACCCTCGAGAAGG
CGGGCCGCGAGGTCCCCGAAGGGCTCGTGGCCTCCTCCGACTTCACCGAGGAGGGCGGCGGGGCCGCCATGCGCTCACTC
CTCGAACAAGTCCCCGCGCTCGACGCCGTGTTCGTCGCCTCGGACGTCATGGCTGCGGGTGCGCTCGCGGAGCTGCGCCG
ACAGGGGCGGCGCGTTCCCGACGACGTCGCGGTGGTCGGGTTCGACGACTCCATCATCGCCAGGCACACCCACCCGCCCC
TCACCAGCGTGCGTCAGCCGGTCGAAGAGATCGGCAGCACGATCGCCCGCATTCTGCTGGCGGAGATCGATGACCCCGAG
GAGCCTCGCCGGCACATCGTCCTTTCCACGGAGCTGGTGGTGCGGGAGTCGTCCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.39

100

0.376