Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU08_RS28030 Genome accession   NZ_CP108128
Coordinates   6405970..6406746 (-) Length   258 a.a.
NCBI ID   WP_081219793.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6400970..6411746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS28020 (OHU08_27995) - 6402605..6403489 (+) 885 WP_406378829.1 GNAT family N-acetyltransferase -
  OHU08_RS28025 (OHU08_28000) - 6403680..6405746 (+) 2067 WP_351484153.1 ATP-dependent DNA helicase -
  OHU08_RS28030 (OHU08_28005) dinR/lexA 6405970..6406746 (-) 777 WP_081219793.1 transcriptional repressor LexA Regulator
  OHU08_RS28035 (OHU08_28010) nrdR 6407266..6407817 (+) 552 WP_164375222.1 transcriptional regulator NrdR -
  OHU08_RS28040 (OHU08_28015) - 6407980..6410883 (+) 2904 WP_406378832.1 vitamin B12-dependent ribonucleotide reductase -
  OHU08_RS28045 (OHU08_28020) - 6411054..6411587 (-) 534 WP_164375220.1 TerD family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27949.65 Da        Isoelectric Point: 7.4755

>NTDB_id=654531 OHU08_RS28030 WP_081219793.1 6405970..6406746(-) (dinR/lexA) [Streptomyces sp. NBC_00197]
MTTTADSATITAQDRSQGRLEPVHAMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=654531 OHU08_RS28030 WP_081219793.1 6405970..6406746(-) (dinR/lexA) [Streptomyces sp. NBC_00197]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGGCGACCTCCAGGCATCCGAGCCGACAGCTCGGGACTCA
CGGACCGGCAACGCCGGGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGCGGTTACCCGCCGTCGATGCGGGAGATC
GGACAGGCCGTCGGCCTTTCCAGCACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGTTTCCTTCGCCG
GGACCCGCACCGCCCTCGCGCCTACGAAGTGCGGGGCTCCGACCAGTCGTCGGTGCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTACCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGACGTG
TTCCCGCTCCCTCGCCAGCTGGTGGGCGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGGAGACTCGATGATCGAAGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAGGCCACGGTGAAGCGCTTCAAGCGGGAGGACGGCCACGTCTGGCTGCTGCCGCACAACTCCGCCTACCAGCCGATC
CCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372