Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CVFO_RS00965 | Genome accession | NZ_AP013043 |
| Coordinates | 170088..171044 (-) | Length | 318 a.a. |
| NCBI ID | WP_201339737.1 | Uniprot ID | - |
| Organism | Isorropodon fossajaponicum endosymbiont JTNG4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 165088..176044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVFO_RS00930 (CVFO_0163) | - | 165371..165850 (-) | 480 | WP_201339731.1 | thioredoxin fold domain-containing protein | - |
| CVFO_RS00935 (CVFO_0164) | hemC | 165881..166795 (+) | 915 | WP_201339732.1 | hydroxymethylbilane synthase | - |
| CVFO_RS00940 (CVFO_0165) | - | 166799..167029 (+) | 231 | WP_225879288.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| CVFO_RS00945 (CVFO_0166) | - | 167078..167518 (+) | 441 | WP_201339733.1 | hypothetical protein | - |
| CVFO_RS00950 (CVFO_0167) | - | 167763..168239 (-) | 477 | WP_201339734.1 | hypothetical protein | - |
| CVFO_RS00955 (CVFO_0168) | - | 168236..169456 (-) | 1221 | WP_201339735.1 | TolC family protein | - |
| CVFO_RS00960 (CVFO_0169) | - | 169552..170055 (-) | 504 | WP_201339736.1 | thioredoxin fold domain-containing protein | - |
| CVFO_RS00965 (CVFO_0170) | pilA | 170088..171044 (-) | 957 | WP_201339737.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CVFO_RS00970 (CVFO_0171) | msrP | 171169..172094 (+) | 926 | Protein_175 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| CVFO_RS00975 (CVFO_0172) | - | 172297..172677 (+) | 381 | WP_245394587.1 | ferric reductase-like transmembrane domain-containing protein | - |
| CVFO_RS00980 (CVFO_0173) | - | 172662..173987 (+) | 1326 | WP_201339739.1 | pitrilysin family protein | - |
| CVFO_RS00985 (CVFO_0174) | - | 173984..175273 (+) | 1290 | WP_201339740.1 | pitrilysin family protein | - |
| CVFO_RS00990 (CVFO_0175) | - | 175284..175619 (+) | 336 | WP_201339741.1 | gamma-glutamylcyclotransferase family protein | - |
| CVFO_RS00995 | - | 175625..175813 (+) | 189 | WP_201339742.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 34391.50 Da Isoelectric Point: 9.5037
>NTDB_id=65450 CVFO_RS00965 WP_201339737.1 170088..171044(-) (pilA) [Isorropodon fossajaponicum endosymbiont JTNG4]
MFNFLKKNQSKSEGLDADKPTSLRQRLDKSRQKLGSGLSSLLLGKKEINEGLLEALEVVLITADVGINTTDKILESVRKN
ASRKTLKDAESLYQFLKDELGKLLIEDNQLNTNINETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAA
VEQLKVWGERNQIPVIAQTTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNANAPHETM
LIIDGGSGQNAINQAKEFNKAVTLSGISITKLDGTAKGGVLFAIAGELNLPIRYIGIGEGIDDLKVFQPKQFINALFD
MFNFLKKNQSKSEGLDADKPTSLRQRLDKSRQKLGSGLSSLLLGKKEINEGLLEALEVVLITADVGINTTDKILESVRKN
ASRKTLKDAESLYQFLKDELGKLLIEDNQLNTNINETFVILVVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAA
VEQLKVWGERNQIPVIAQTTGADAASVIFDAYQSAQAKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNANAPHETM
LIIDGGSGQNAINQAKEFNKAVTLSGISITKLDGTAKGGVLFAIAGELNLPIRYIGIGEGIDDLKVFQPKQFINALFD
Nucleotide
Download Length: 957 bp
>NTDB_id=65450 CVFO_RS00965 WP_201339737.1 170088..171044(-) (pilA) [Isorropodon fossajaponicum endosymbiont JTNG4]
ATGTTTAATTTTTTAAAAAAAAATCAGTCAAAATCAGAAGGTTTAGATGCAGACAAGCCGACTTCATTAAGACAACGCTT
AGATAAATCTAGACAAAAGTTAGGGTCTGGCTTATCTTCTTTATTATTAGGTAAAAAAGAAATTAATGAGGGTTTATTAG
AAGCACTAGAGGTGGTATTAATCACTGCTGATGTTGGCATTAATACCACAGATAAAATACTAGAATCTGTACGTAAAAAT
GCCTCTAGGAAAACCCTAAAAGATGCTGAAAGCTTATATCAATTCTTAAAAGATGAATTGGGCAAATTACTGATTGAAGA
TAACCAGCTTAATACTAATATTAATGAAACTTTTGTTATTCTAGTCGTGGGTGTTAATGGTGCTGGTAAAACCACCTTGA
TTGGCAAGTTAGCAAAATCTTTTCAAAATCAAGGTAAGTCGGTTATGTTAGCAGCAGGCGATACCTTCCGCGCTGCAGCT
GTTGAACAACTTAAAGTATGGGGCGAGCGTAATCAAATACCCGTGATTGCACAAACAACAGGTGCTGATGCAGCTTCGGT
TATCTTTGATGCCTACCAATCAGCACAAGCTAAGAATATTGACATCTTAATTGCTGACACGGCAGGACGATTACACACGC
AAGACAACCTCATGCAAGAACTGGCCAAAATTAAACGCGTCATTGCCAAACAAAATGCAAATGCACCGCATGAAACCATG
CTAATTATTGACGGCGGGTCAGGACAAAACGCTATCAATCAAGCTAAAGAATTTAACAAAGCAGTTACTCTAAGCGGCAT
TAGCATCACTAAACTAGATGGCACTGCCAAGGGCGGAGTTTTATTTGCAATTGCTGGTGAGCTTAATTTGCCTATTCGTT
ATATTGGCATAGGTGAAGGGATTGATGATCTTAAAGTCTTTCAACCCAAGCAATTCATTAACGCTTTGTTTGATTAA
ATGTTTAATTTTTTAAAAAAAAATCAGTCAAAATCAGAAGGTTTAGATGCAGACAAGCCGACTTCATTAAGACAACGCTT
AGATAAATCTAGACAAAAGTTAGGGTCTGGCTTATCTTCTTTATTATTAGGTAAAAAAGAAATTAATGAGGGTTTATTAG
AAGCACTAGAGGTGGTATTAATCACTGCTGATGTTGGCATTAATACCACAGATAAAATACTAGAATCTGTACGTAAAAAT
GCCTCTAGGAAAACCCTAAAAGATGCTGAAAGCTTATATCAATTCTTAAAAGATGAATTGGGCAAATTACTGATTGAAGA
TAACCAGCTTAATACTAATATTAATGAAACTTTTGTTATTCTAGTCGTGGGTGTTAATGGTGCTGGTAAAACCACCTTGA
TTGGCAAGTTAGCAAAATCTTTTCAAAATCAAGGTAAGTCGGTTATGTTAGCAGCAGGCGATACCTTCCGCGCTGCAGCT
GTTGAACAACTTAAAGTATGGGGCGAGCGTAATCAAATACCCGTGATTGCACAAACAACAGGTGCTGATGCAGCTTCGGT
TATCTTTGATGCCTACCAATCAGCACAAGCTAAGAATATTGACATCTTAATTGCTGACACGGCAGGACGATTACACACGC
AAGACAACCTCATGCAAGAACTGGCCAAAATTAAACGCGTCATTGCCAAACAAAATGCAAATGCACCGCATGAAACCATG
CTAATTATTGACGGCGGGTCAGGACAAAACGCTATCAATCAAGCTAAAGAATTTAACAAAGCAGTTACTCTAAGCGGCAT
TAGCATCACTAAACTAGATGGCACTGCCAAGGGCGGAGTTTTATTTGCAATTGCTGGTGAGCTTAATTTGCCTATTCGTT
ATATTGGCATAGGTGAAGGGATTGATGATCTTAAAGTCTTTCAACCCAAGCAATTCATTAACGCTTTGTTTGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
53.356 |
93.711 |
0.5 |