Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHU08_RS13005 Genome accession   NZ_CP108128
Coordinates   2969168..2971096 (+) Length   642 a.a.
NCBI ID   WP_164370732.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2964168..2976096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS12990 (OHU08_12985) - 2965392..2965697 (+) 306 WP_164370735.1 YtxH domain-containing protein -
  OHU08_RS12995 (OHU08_12990) - 2965795..2967249 (+) 1455 WP_164370734.1 FGGY family carbohydrate kinase -
  OHU08_RS13000 (OHU08_12995) rcrP 2967435..2969168 (+) 1734 WP_164370733.1 ABC transporter ATP-binding protein Regulator
  OHU08_RS13005 (OHU08_13000) rcrQ 2969168..2971096 (+) 1929 WP_164370732.1 ABC transporter ATP-binding protein Regulator
  OHU08_RS13010 (OHU08_13005) - 2971382..2972668 (-) 1287 WP_266613529.1 RNA polymerase sigma factor -
  OHU08_RS13015 (OHU08_13010) dnaG 2972906..2974810 (-) 1905 WP_081217151.1 DNA primase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69251.68 Da        Isoelectric Point: 6.2062

>NTDB_id=654490 OHU08_RS13005 WP_164370732.1 2969168..2971096(+) (rcrQ) [Streptomyces sp. NBC_00197]
MAGPMGRMMAGSGPDQRSMEFKVSGRRLLTQFKPERATLYVMLVAVVFSVGLSVVGPKILGRATDLVFAGIVGRQMPAGA
TKAESLDSLRAHGQGAVADMLKSTAFTPGEGIDFHAVGNVLLIALCTFLLAGLLMAVATRLVNRSVNRTVFRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDMDNIQQTLQQSMGQLVNSLLTIVGVLAMMFWVSPLLALVALVTVPLSFVVATRIGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRADESAAQFAEQNEKLYQAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERVFEILDADEQPADPAVSAGPAELRGRVALE
HVSFRYDPEKPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDVASISRDELRAAVGMVLQDT
WLFGGTIADNIAYGAAREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHAELLESGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=654490 OHU08_RS13005 WP_164370732.1 2969168..2971096(+) (rcrQ) [Streptomyces sp. NBC_00197]
ATGGCCGGGCCGATGGGGCGCATGATGGCCGGGAGCGGCCCGGACCAGCGCTCGATGGAATTCAAGGTGTCGGGCCGCAG
GCTGCTCACCCAGTTCAAGCCCGAGCGCGCCACGCTGTACGTCATGCTGGTCGCCGTGGTCTTCAGCGTCGGCCTGTCGG
TGGTCGGCCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGGCAGATGCCGGCCGGCGCC
ACCAAGGCCGAGTCCCTGGACTCGCTGCGCGCGCACGGCCAGGGTGCCGTCGCCGACATGCTCAAGAGCACGGCCTTCAC
CCCCGGCGAGGGCATCGACTTCCACGCCGTCGGCAACGTCCTGCTGATCGCGCTCTGTACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTCGCGACGCGGCTGGTGAACCGGTCCGTCAACAGGACCGTCTTCCGGATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTCCTCAGCCGGGCCACGAACGACATGGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTCGTCAACTCGCTGCTGACCATCGTGGGCGTGCTCGCGATGATGT
TCTGGGTGTCGCCGCTGCTCGCGCTCGTCGCGCTGGTCACGGTGCCGCTGTCGTTCGTCGTCGCGACCCGGATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGGCCGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGCTCTACCAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCGAACCTCAACTACGTGCTGGTCGCG
GTGGTCGGCGGACTGCGCGTCGCCTCCGGCACGCTGTCGATCGGTGACGTGCAGGCCTTCGTCCAGTACTCCCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGGTCTTCGAGA
TCCTCGACGCGGACGAGCAGCCGGCGGACCCGGCGGTCTCGGCCGGCCCCGCCGAACTGCGCGGGCGCGTGGCGCTGGAG
CACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGACGGTGGAGCCGGGCCGGACGGTGGC
CATCGTCGGCCCGACCGGGGCCGGCAAGACCACCCTGGTGAACCTGCTGATGCGGTTCTACGACGTCACGGGCGGCCGCA
TCACCCTCGACGGGGTCGACGTGGCGTCCATCTCCCGTGACGAACTGCGGGCCGCCGTCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACGATCGCCGACAACATCGCGTACGGCGCCGCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGCGCCGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGATCGG
GCGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCCTTCCTGTCGGACCCGGTCATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGCCGGACGTCGTT
CGTGATCGCCCACCGCCTGTCGACGATCCGGGACGCCGACACGATCCTCGTGATGGAGGACGGCGCGATCGTCGAACAGG
GCGCGCACGCCGAGCTGCTGGAGTCCGGCGGCGCCTACGCCCGCCTCTACCAGGCCCAGTTCGCCCAGGCGGTCGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.644

96.262

0.382