Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHU08_RS13000 Genome accession   NZ_CP108128
Coordinates   2967435..2969168 (+) Length   577 a.a.
NCBI ID   WP_164370733.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962435..2974168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS12970 (OHU08_12965) - 2963020..2964003 (-) 984 WP_164370736.1 alpha/beta fold hydrolase -
  OHU08_RS12990 (OHU08_12985) - 2965392..2965697 (+) 306 WP_164370735.1 YtxH domain-containing protein -
  OHU08_RS12995 (OHU08_12990) - 2965795..2967249 (+) 1455 WP_164370734.1 FGGY family carbohydrate kinase -
  OHU08_RS13000 (OHU08_12995) rcrP 2967435..2969168 (+) 1734 WP_164370733.1 ABC transporter ATP-binding protein Regulator
  OHU08_RS13005 (OHU08_13000) rcrQ 2969168..2971096 (+) 1929 WP_164370732.1 ABC transporter ATP-binding protein Regulator
  OHU08_RS13010 (OHU08_13005) - 2971382..2972668 (-) 1287 WP_266613529.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62454.75 Da        Isoelectric Point: 6.4229

>NTDB_id=654489 OHU08_RS13000 WP_164370733.1 2967435..2969168(+) (rcrP) [Streptomyces sp. NBC_00197]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTDYILSFGALMIGISLAQVVCNIGAVYYGA
RTASAVGRDVRAAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFKGANTDLTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTDSSVVP
PLAPVLELRRHGHLELRGAGFRYPGAEEPVLKSVDLVARPGEITAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIGPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALDVAQAKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654489 OHU08_RS13000 WP_164370733.1 2967435..2969168(+) (rcrP) [Streptomyces sp. NBC_00197]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTCCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGACTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCTCAGGTCGTCTGCAACATCGGAGCCGTCTACTACGGCGCC
CGCACGGCGTCCGCGGTCGGCCGGGACGTCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCCGCCCGTGAGATGGG
TCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCACTGATGACGTTCA
CCCTTCTGGTGTCGGCCCCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTCGACGTGCCGCTGTCCGCGGTG
CTCATCGCCGTGGTGCCGACCCTCGGCATCTGCGTCACGCTGATCGTGCGCCGGCTGCGCCCCCTCTTCCGCACGATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCGTTCGTCCGCGACG
GTTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGACCTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGTGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACGGACAGCAGCGTGGTCCCG
CCCCTCGCGCCCGTCCTGGAGCTGCGCCGTCACGGCCACCTGGAGCTCCGCGGCGCGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTCGTGGCACGCCCCGGGGAGATCACCGCCGTCATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTCCTCGGCCTGGTCCCCCGGCTGTTCGACGCCACCGACGGCGAGGTCCTCGTCGACGGCGTCGACGTGGCG
ACGATCGGCCCGAAGCTGCTGGCCAGAACGGTCGGACTGGTCCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTCGCCAC
CAACCTGCGCTACGGCAACCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGACGTCGCGCAGGCCAAGGGCTTCG
TCGAGCGCCTCGAAGGCGGCCTGGACGCGCCGATCGCCCAGGGCGGCACCAACGTGTCGGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACCGA
CGCGGCCCTGCGCGCGGCGCTCGCCGAGGAGACCGCCGAGGCCACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCATCACGAACTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.408

100

0.385