Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   OHU08_RS11510 Genome accession   NZ_CP108128
Coordinates   2619172..2620272 (+) Length   366 a.a.
NCBI ID   WP_406377818.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2614172..2625272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS11480 (OHU08_11470) - 2614283..2614966 (-) 684 WP_081216807.1 response regulator transcription factor -
  OHU08_RS11485 (OHU08_11475) - 2614963..2616183 (-) 1221 WP_266613103.1 sensor histidine kinase -
  OHU08_RS11490 (OHU08_11480) - 2616317..2616595 (-) 279 WP_164373924.1 PspA-associated protein PspAA -
  OHU08_RS11495 (OHU08_11485) - 2616626..2617423 (-) 798 WP_081216810.1 PspA/IM30 family protein -
  OHU08_RS11500 (OHU08_11490) - 2617670..2618293 (+) 624 WP_266613106.1 DUF3043 domain-containing protein -
  OHU08_RS11505 (OHU08_11495) - 2618377..2619078 (+) 702 WP_266613108.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  OHU08_RS11510 (OHU08_11500) htrA 2619172..2620272 (+) 1101 WP_406377818.1 S1C family serine protease Regulator
  OHU08_RS11515 (OHU08_11505) - 2620439..2620651 (-) 213 WP_081216814.1 hypothetical protein -
  OHU08_RS11520 (OHU08_11510) - 2620765..2621964 (+) 1200 WP_164373920.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  OHU08_RS11525 (OHU08_11515) - 2622017..2623084 (-) 1068 WP_164373919.1 class I SAM-dependent methyltransferase -
  OHU08_RS11530 (OHU08_11520) cobT 2623207..2624391 (+) 1185 WP_406377820.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence


Protein


Download         Length: 366 a.a.        Molecular weight: 36372.02 Da        Isoelectric Point: 5.7962

>NTDB_id=654488 OHU08_RS11510 WP_406377818.1 2619172..2620272(+) (htrA) [Streptomyces sp. NBC_00197]
MDASRALARARVHPLRLRASLALLAGAAVLVSGCSADGAASGSGQRQGATTTRAAVPAAADDLQDDYLKVIKNVLPSVVQ
IRASGALGSGVVYDDSGRIVTNAHVVGDEKKFKVTTASDEGELTASLVYAYPEQDLAVIKLDKPPQGLKAAVFGDSSKVQ
VGHIVLAMGSPLGLSSSVTQGIVSATGRTVSESGSGGGTGATIANMVQTSAAINPGNSGGALVNLDGQVIGIPTLAATDP
DLGNSAAPGIGFAIPASMVKTVADQIIKDGRVTDSGRAALGITGRTVVDASSQPAGVAVAQVKSGGAADKAGIEPGDVIV
GLDDTAVTSITSLSEALAAEKPGDKAKVTFTRGGNRRTVEVTLGEI

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=654488 OHU08_RS11510 WP_406377818.1 2619172..2620272(+) (htrA) [Streptomyces sp. NBC_00197]
ATGGATGCCTCCCGTGCCCTCGCCCGCGCCCGTGTTCATCCCCTGCGCCTGCGGGCGTCCCTGGCCCTGCTGGCCGGCGC
GGCCGTGCTGGTGTCCGGCTGCTCGGCCGACGGAGCGGCTTCCGGCTCCGGCCAGAGGCAAGGCGCGACCACCACCCGGG
CGGCGGTGCCCGCGGCGGCCGACGACCTCCAGGACGACTACCTGAAGGTGATCAAGAACGTTCTGCCGTCGGTGGTGCAG
ATCCGGGCGAGCGGCGCGCTCGGCTCGGGTGTCGTCTACGACGACTCGGGGCGCATCGTCACCAACGCGCACGTGGTCGG
GGACGAGAAGAAGTTCAAGGTCACGACGGCCAGCGACGAGGGCGAGCTGACGGCGAGCCTCGTCTACGCGTACCCGGAGC
AGGATCTCGCGGTCATCAAGCTGGACAAGCCTCCGCAGGGGCTGAAGGCCGCGGTCTTCGGGGACTCCTCGAAGGTGCAG
GTCGGGCACATCGTGCTCGCGATGGGCTCCCCGCTCGGACTGTCCTCCAGCGTGACCCAGGGCATCGTGTCGGCGACCGG
ACGCACCGTCAGCGAGAGCGGCTCCGGGGGCGGTACGGGCGCGACGATCGCCAACATGGTGCAGACCTCGGCGGCGATCA
ACCCCGGCAACAGCGGGGGCGCGCTGGTGAACCTCGACGGCCAGGTCATCGGCATCCCGACCCTCGCCGCCACCGACCCC
GACCTCGGCAACAGCGCGGCGCCCGGGATCGGCTTCGCGATCCCCGCCTCCATGGTGAAGACGGTCGCGGACCAGATCAT
CAAGGACGGCCGGGTCACCGACTCGGGGCGGGCCGCGCTCGGCATCACCGGACGGACCGTGGTGGACGCCTCCTCGCAGC
CCGCGGGCGTCGCCGTGGCGCAGGTGAAGAGCGGGGGCGCGGCCGACAAGGCCGGGATCGAACCGGGTGACGTCATCGTG
GGCCTCGACGACACGGCGGTCACGAGCATCACCTCGCTCTCCGAGGCGCTCGCCGCGGAGAAGCCGGGCGACAAGGCCAA
GGTGACGTTCACCCGCGGCGGGAACCGCAGGACGGTGGAGGTGACGCTGGGTGAGATCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

33.333

100

0.369