Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHU08_RS00820 Genome accession   NZ_CP108128
Coordinates   214072..214287 (-) Length   71 a.a.
NCBI ID   WP_203658845.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00197     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 209072..219287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHU08_RS00795 (OHU08_00795) - 209174..209575 (-) 402 WP_164369875.1 DUF6281 family protein -
  OHU08_RS00800 (OHU08_00800) - 209585..210643 (-) 1059 WP_406377169.1 peptidase M10 -
  OHU08_RS00805 (OHU08_00805) - 211274..211603 (+) 330 WP_239154743.1 DUF6087 family protein -
  OHU08_RS00810 (OHU08_00810) - 212802..213527 (-) 726 WP_406377170.1 SOS response-associated peptidase -
  OHU08_RS00820 (OHU08_00820) dinR/lexA 214072..214287 (-) 216 WP_203658845.1 hypothetical protein Regulator
  OHU08_RS00825 (OHU08_00825) - 215155..216054 (-) 900 WP_164369873.1 alpha/beta fold hydrolase -
  OHU08_RS00830 (OHU08_00830) - 216140..216724 (+) 585 WP_327410868.1 TetR/AcrR family transcriptional regulator -
  OHU08_RS00835 - 216981..217073 (-) 93 Protein_164 DUF4158 domain-containing protein -
  OHU08_RS00840 (OHU08_00840) - 218258..218749 (-) 492 WP_388699375.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 7561.86 Da        Isoelectric Point: 4.7738

>NTDB_id=654471 OHU08_RS00820 WP_203658845.1 214072..214287(-) (dinR/lexA) [Streptomyces sp. NBC_00197]
MREPRQVVGVGDLFVLTVVGDSMSDASICDGEVLRGQDGQVWLMPRNPACQPMPGGQAQILGKVVGVLRLL

Nucleotide


Download         Length: 216 bp        

>NTDB_id=654471 OHU08_RS00820 WP_203658845.1 214072..214287(-) (dinR/lexA) [Streptomyces sp. NBC_00197]
GTGCGTGAACCCCGCCAGGTCGTTGGTGTCGGTGACCTGTTCGTTCTGACCGTGGTCGGCGACTCCATGAGCGACGCGTC
GATCTGTGACGGCGAGGTGCTGCGCGGGCAGGACGGTCAGGTGTGGCTGATGCCCCGCAACCCCGCCTGCCAGCCGATGC
CCGGTGGCCAGGCGCAGATTCTCGGCAAGGTCGTCGGCGTCCTGCGGCTTCTCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

29.885

100

0.366