Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG975_RS35110 Genome accession   NZ_CP108126
Coordinates   7870140..7870829 (+) Length   229 a.a.
NCBI ID   WP_406333332.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7865140..7875829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS35095 (OG975_35010) - 7865765..7867888 (+) 2124 WP_330307753.1 DNA topoisomerase IV subunit B -
  OG975_RS35100 (OG975_35015) - 7868471..7868995 (+) 525 WP_406333328.1 DUF1453 domain-containing protein -
  OG975_RS35105 (OG975_35020) - 7868992..7870143 (+) 1152 WP_406333330.1 sensor histidine kinase -
  OG975_RS35110 (OG975_35025) vraR 7870140..7870829 (+) 690 WP_406333332.1 response regulator Regulator
  OG975_RS35115 (OG975_35030) - 7870934..7871422 (+) 489 WP_330307757.1 DUF485 domain-containing protein -
  OG975_RS35120 (OG975_35035) - 7871419..7873011 (+) 1593 WP_406333333.1 cation acetate symporter -
  OG975_RS35125 (OG975_35040) - 7873088..7873780 (-) 693 WP_327432232.1 response regulator -
  OG975_RS35130 (OG975_35045) - 7873943..7874758 (+) 816 WP_406333335.1 ABC transporter ATP-binding protein -
  OG975_RS35135 (OG975_35050) - 7874748..7875623 (+) 876 WP_406333337.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24267.82 Da        Isoelectric Point: 5.0036

>NTDB_id=654455 OG975_RS35110 WP_406333332.1 7870140..7870829(+) (vraR) [Streptomyces sp. NBC_00203]
MTEAVEAGRKPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGNEAVALVAELAPDVVLMDLRMPRCDGVEATRRIR
TEHPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPEPGPVLPPEA
PDGITARETEVLLLIAEGLSNQEIARKLHVSTATVKTHINNLFAKTGLKDRAQAVRYAYGKGLVRPPAG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=654455 OG975_RS35110 WP_406333332.1 7870140..7870829(+) (vraR) [Streptomyces sp. NBC_00203]
ATGACGGAGGCGGTGGAGGCGGGCAGGAAGCCGGCGCGGGTCGTGGTGGCGGACGACCAGACCGTGGTGCGTGAGGGCAT
TGTGATGCTGCTGGGTCTGCTGCCCGGGATCGAGGTCGTCGGAGCGGCCGGGGACGGGAACGAGGCCGTGGCGCTTGTCG
CCGAACTCGCCCCGGACGTCGTGCTGATGGATCTGCGGATGCCCCGCTGTGACGGTGTCGAGGCGACCCGGCGCATCCGC
ACCGAGCACCCTGGGACGCAGGTCGTCGTGCTCACGACGTACGCGGACGACGAGTCGCTGTTTCCCGCGCTCAGAGCGGG
GGCTCGCGGCTATCTCACCAAGGACGCGGGAGGCGACGAGATCGTACGGGCGGTGGAGAGCGTGCTGTCCGGGGATGCGG
GACTCTCGCCGAGCATCCAGCGGCGGCTGCTGGAGCGGCTGTCGGAGCCGGAACCCGGACCGGTCCTGCCTCCGGAGGCG
CCGGACGGGATCACCGCGCGCGAGACCGAGGTGCTTCTGCTGATCGCGGAGGGGCTCAGCAACCAGGAGATCGCCCGCAA
GCTGCATGTCTCCACGGCCACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACGGGGCTGAAGGACCGTGCTCAAG
CAGTCCGTTACGCCTATGGGAAGGGTCTCGTACGGCCACCGGCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-125)

Bacterial regulatory proteins, luxR family (GerE)

(164-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.967

93.013

0.362