Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG975_RS27100 Genome accession   NZ_CP108126
Coordinates   6052854..6054263 (-) Length   469 a.a.
NCBI ID   WP_327430649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6047854..6059263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS27080 (OG975_27000) - 6048455..6049006 (-) 552 WP_327430645.1 SigE family RNA polymerase sigma factor -
  OG975_RS27085 (OG975_27005) - 6049305..6050225 (-) 921 WP_406331983.1 A/G-specific adenine glycosylase -
  OG975_RS27090 (OG975_27010) - 6050646..6051455 (+) 810 WP_406331984.1 hypothetical protein -
  OG975_RS27095 (OG975_27015) disA 6051661..6052785 (-) 1125 WP_406331985.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG975_RS27100 (OG975_27020) radA/sms 6052854..6054263 (-) 1410 WP_327430649.1 DNA repair protein RadA Machinery gene
  OG975_RS27105 (OG975_27025) - 6054460..6056232 (+) 1773 WP_406331986.1 BACON domain-containing protein -
  OG975_RS27110 (OG975_27030) - 6056326..6057186 (-) 861 WP_406331987.1 hypothetical protein -
  OG975_RS27115 (OG975_27035) - 6057258..6058190 (+) 933 WP_406331988.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49785.98 Da        Isoelectric Point: 8.0022

>NTDB_id=654432 OG975_RS27100 WP_327430649.1 6052854..6054263(-) (radA/sms) [Streptomyces sp. NBC_00203]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=654432 OG975_RS27100 WP_327430649.1 6052854..6054263(-) (radA/sms) [Streptomyces sp. NBC_00203]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTACGGACGACGACTCCGGGCC
GCGTCACCACCTCCGCGGTTCCCATCGGGCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGGCTCGTGCCCGGTGCGGTCGTCCTGGTCGCGGGCGAGCCGGGGGTCGGCAAGTCCACGCT
CCTGCTCGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTGTATGTGACGGGTGAGGAGTCGGCGAGCCAGG
TGCGCCTCCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTGGCCGCCGAAACCGACCTGGCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTGCAGACGGTCGCCTCCCCGGAGATCGACGGAGC
GCCGGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGAGCGCTCATCCGCGCCTCCAAGGACCGCGGCATGTCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTCGAACATCTCGTGGACGTCGTCCTCAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTGGTCCGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCCCCCCGTCGTACGACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGGCCG
GATCACGGCCCTCGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCAGACCTCG
CGATCGCGCTCGCCCTCGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAAAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTCCAGCGCCGGCTCGCCGAAGCCCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGACGGACCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGACGCCCTGCGGGTCCTCC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409