Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG975_RS20300 Genome accession   NZ_CP108126
Coordinates   4520561..4521559 (-) Length   332 a.a.
NCBI ID   WP_406330704.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4515561..4526559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS20280 (OG975_20195) - 4515741..4517297 (-) 1557 WP_406330700.1 MFS transporter -
  OG975_RS20285 (OG975_20200) - 4517360..4518415 (+) 1056 WP_406330701.1 helix-turn-helix transcriptional regulator -
  OG975_RS20290 (OG975_20205) - 4518393..4519160 (-) 768 WP_406330702.1 glucose 1-dehydrogenase -
  OG975_RS20295 (OG975_20210) - 4519157..4519828 (-) 672 WP_406330703.1 TetR family transcriptional regulator -
  OG975_RS20300 (OG975_20215) rpoS 4520561..4521559 (-) 999 WP_406330704.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG975_RS20305 (OG975_20220) - 4521734..4522270 (+) 537 WP_406330705.1 GNAT family N-acetyltransferase -
  OG975_RS20310 (OG975_20225) - 4522279..4523085 (-) 807 WP_406330707.1 dioxygenase -
  OG975_RS20315 (OG975_20230) - 4523227..4523730 (+) 504 WP_327429414.1 MarR family transcriptional regulator -
  OG975_RS20320 (OG975_20235) - 4523911..4525425 (-) 1515 WP_406330709.1 MFS transporter -
  OG975_RS20325 (OG975_20240) - 4525594..4526238 (-) 645 WP_406330710.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37104.90 Da        Isoelectric Point: 5.0475

>NTDB_id=654416 OG975_RS20300 WP_406330704.1 4520561..4521559(-) (rpoS) [Streptomyces sp. NBC_00203]
MATRAVARRKSATGETSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQILDGEAAAKAD
ASPEELEALVAEGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=654416 OG975_RS20300 WP_406330704.1 4520561..4521559(-) (rpoS) [Streptomyces sp. NBC_00203]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCAGCGACGCGGCACGCAGTGTTCGCGTCGTAGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCACTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGGCGAGGCTGCGGCCAAGGCGGAC
GCGTCCCCCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGCGAGCGAGCGAAGGACATCTTCATCCGCTCGAACCTCCGGCT
GGTCGTCGCTGTCGCCCGGCGCTATCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGG
TGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTCCACCTGGTCGAGGAACTGGGCCGGATCCGGCGCGT
ACAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTCGACTCGACGCCGGAGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCCCCCGAGCAGTCGGTCATGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGCCGCCTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGATGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTTCTCGAACTGAAG
AAGCTGGCCCGTGACACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364