Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG975_RS15875 Genome accession   NZ_CP108126
Coordinates   3504818..3505486 (-) Length   222 a.a.
NCBI ID   WP_406329825.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3499818..3510486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS15855 (OG975_15785) - 3500629..3501564 (+) 936 WP_406329820.1 dihydrodipicolinate synthase family protein -
  OG975_RS15860 (OG975_15790) - 3501639..3502499 (-) 861 WP_406329821.1 class I SAM-dependent methyltransferase -
  OG975_RS15865 (OG975_15795) - 3502574..3503161 (+) 588 WP_406329822.1 TetR/AcrR family transcriptional regulator -
  OG975_RS15870 (OG975_15800) - 3503476..3504693 (-) 1218 WP_406329824.1 exo-alpha-sialidase -
  OG975_RS15875 (OG975_15805) vraR 3504818..3505486 (-) 669 WP_406329825.1 response regulator Regulator
  OG975_RS15880 (OG975_15810) - 3505483..3506787 (-) 1305 WP_406336282.1 sensor histidine kinase -
  OG975_RS15885 (OG975_15815) - 3506903..3508987 (-) 2085 WP_406329827.1 MMPL family transporter -
  OG975_RS15890 (OG975_15820) - 3509128..3509823 (-) 696 WP_406329828.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23377.96 Da        Isoelectric Point: 4.8054

>NTDB_id=654405 OG975_RS15875 WP_406329825.1 3504818..3505486(-) (vraR) [Streptomyces sp. NBC_00203]
MTIRVLLADDQTLVRAAFAMLVESARDMEVVGQAATGREAVELARSARADLVVMDIRMPDLDGIEATRLIAADENLAGVR
VLVLTTYDTDEYIAEALRAGASGFLVKDTRPAELLDAIRTVAAGDALLSPGPTARLIARFLRSPAAPVPVAGGPDGLSER
EREVLALVARGLNNTEIAGALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGLVTPGAW

Nucleotide


Download         Length: 669 bp        

>NTDB_id=654405 OG975_RS15875 WP_406329825.1 3504818..3505486(-) (vraR) [Streptomyces sp. NBC_00203]
ATGACCATTCGCGTACTTCTCGCCGACGATCAGACGCTCGTGCGGGCCGCGTTCGCCATGCTCGTCGAGTCGGCGCGGGA
CATGGAGGTCGTGGGACAGGCGGCCACCGGGCGGGAGGCGGTGGAGCTGGCGCGCAGCGCGCGGGCCGATCTGGTCGTCA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTCATCGCGGCCGACGAGAACCTGGCCGGGGTCAGG
GTCCTGGTCCTCACCACGTACGACACCGACGAGTACATCGCGGAGGCCCTGCGCGCGGGCGCCTCCGGCTTCCTGGTGAA
GGACACGAGGCCCGCCGAACTCCTCGACGCCATCCGCACGGTGGCCGCCGGGGACGCCCTGCTGTCACCGGGCCCGACCG
CCCGCCTGATCGCCCGCTTCCTGCGCAGCCCGGCGGCTCCCGTGCCCGTGGCGGGTGGCCCCGACGGCCTCTCCGAGCGG
GAGCGCGAGGTGCTGGCGCTGGTCGCGCGCGGCCTCAACAACACCGAGATAGCGGGGGCGTTGGGCCTGAGCCCGCTGAC
CGCGAAGACCCATGTCAGCCGCATCATGGGCAAGCTGGGCGCGCGGGACCGGGCCCAGCTGGTGATCGTGGCGTACGAGT
CGGGGCTCGTCACTCCGGGCGCATGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.327

97.748

0.365