Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG975_RS15475 Genome accession   NZ_CP108126
Coordinates   3414763..3416691 (+) Length   642 a.a.
NCBI ID   WP_406329744.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3409763..3421691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS15460 (OG975_15395) - 3410907..3411212 (+) 306 WP_406329741.1 YtxH domain-containing protein -
  OG975_RS15465 (OG975_15400) - 3411354..3412808 (+) 1455 WP_406329742.1 FGGY family carbohydrate kinase -
  OG975_RS15470 (OG975_15405) rcrP 3413030..3414763 (+) 1734 WP_406329743.1 ABC transporter ATP-binding protein Regulator
  OG975_RS15475 (OG975_15410) rcrQ 3414763..3416691 (+) 1929 WP_406329744.1 ABC transporter ATP-binding protein Regulator
  OG975_RS15480 (OG975_15415) - 3416915..3418255 (-) 1341 WP_406329745.1 RNA polymerase sigma factor -
  OG975_RS15485 (OG975_15420) dnaG 3418438..3420339 (-) 1902 WP_406329746.1 DNA primase -
  OG975_RS15490 (OG975_15425) - 3420386..3421651 (-) 1266 WP_406329748.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69480.05 Da        Isoelectric Point: 5.9084

>NTDB_id=654404 OG975_RS15475 WP_406329744.1 3414763..3416691(+) (rcrQ) [Streptomyces sp. NBC_00203]
MAGPMGRMMAGGGPDQHSMDFKGSGKRLLSQFKPERLTMYGMLCAVVLSVALSVIGPKILGKATDLVFSGIIGRQMPSGS
TKAEVLASMRERGEGGMADMLSGTDFTPGQGIDFAAVGNVLLLALCTFLLAGLLMAVATRLVNRAVNKTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLVNSLLTIVGVLVMMFWVSPLLALVALVTVPLSFFVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPMPAARPDELRGRVALQ
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIASMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPEGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTELLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=654404 OG975_RS15475 WP_406329744.1 3414763..3416691(+) (rcrQ) [Streptomyces sp. NBC_00203]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCACTCGATGGATTTCAAGGGGTCCGGCAAACG
GCTCCTCTCCCAGTTCAAGCCCGAGCGCCTCACCATGTACGGCATGCTGTGCGCCGTCGTCCTGAGCGTGGCGCTCTCGG
TGATCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCTCCGGAATCATCGGGCGGCAGATGCCGTCCGGCAGC
ACCAAGGCCGAGGTCCTCGCGTCCATGCGCGAGCGCGGCGAGGGCGGCATGGCCGACATGCTCTCGGGGACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGCCGCCGTCGGGAACGTACTGCTGCTCGCGCTCTGTACGTTCCTGCTGGCCGGCCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCCGTCAACAAGACCGTGTACCGCATGCGCGAGGACCTCCAGGCGAAG
CTGTCGCGCCTTCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATCGACAA
CATCCAGCAGACGCTGCAGCAGTCGATGGGCCAGCTGGTCAACTCGCTGCTCACCATCGTGGGTGTGCTGGTGATGATGT
TCTGGGTCTCGCCGCTGCTCGCCCTGGTCGCGCTGGTCACGGTCCCGCTCTCCTTCTTCGTCGCCACGCGCGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGCCAGGACGAGTCGGCGGCGCAGTTCGCCGAGCAGAACGAGAAGTTGTACGAGGCCG
GGTTCAAGGCACAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTGGTCGGCGGACTGCGCGTCGCGTCCGGCTCGCTGTCCATCGGTGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAATCTGGTGCAGTCGGGTGTCGCGTCGGCGGAGCGGATCTTCGAGC
TCCTCGACGCGGAGGAGCAGGAGGCCGACCCGATGCCGGCGGCCCGTCCCGACGAGCTGCGCGGGCGGGTGGCCCTGCAG
AACGTGTCGTTCCGGTACGACCCCGAGAAGCCGCTGATCGAGGATCTGTCGCTGAAGGTGGAGCCCGGGCACACGGTGGC
GATCGTCGGCCCGACAGGTGCCGGCAAGACAACACTGGTGAACCTGCTGATGCGGTTCTACGAAGTCACCGGGGGGCGCA
TCACCCTCGACGGTGTCGACATCGCGTCCATGTCCCGGGACGAACTCCGGGCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGGGGCACTATCGCCGAGAACATCGCATACGGCGCCTCGCGGGACGTCACGCGGGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCGGATCGGTTCATCCGGACGCTGCCGGAGGGCTACGACACCGTGATCGACGACGAGGGGTCGG
GGGTCAGTGCGGGTGAGAAGCAGCTGATCACGATTGCCCGGGCGTTCCTGTCCGATCCGGTGATTCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTCGCGCATGGGCGGACCTCGTT
CGTGATCGCGCATCGGCTGTCGACGATTCGGGATGCCGACACGATTCTGGTGATGGAGAACGGGTCGATCGTGGAGCAGG
GCGCACACACGGAACTGCTGGCCGCGGGCGGGGCGTACGCGCGCCTGTACCAGGCCCAGTTCGCCCAGGCGGTGGCTGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(57-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.453

96.262

0.389