Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG975_RS15470 Genome accession   NZ_CP108126
Coordinates   3413030..3414763 (+) Length   577 a.a.
NCBI ID   WP_406329743.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00203     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3408030..3419763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG975_RS15435 (OG975_15370) - 3408441..3409292 (+) 852 WP_406329739.1 alpha/beta fold hydrolase -
  OG975_RS15440 (OG975_15375) - 3409508..3409639 (+) 132 WP_406329740.1 LuxR C-terminal-related transcriptional regulator -
  OG975_RS15460 (OG975_15395) - 3410907..3411212 (+) 306 WP_406329741.1 YtxH domain-containing protein -
  OG975_RS15465 (OG975_15400) - 3411354..3412808 (+) 1455 WP_406329742.1 FGGY family carbohydrate kinase -
  OG975_RS15470 (OG975_15405) rcrP 3413030..3414763 (+) 1734 WP_406329743.1 ABC transporter ATP-binding protein Regulator
  OG975_RS15475 (OG975_15410) rcrQ 3414763..3416691 (+) 1929 WP_406329744.1 ABC transporter ATP-binding protein Regulator
  OG975_RS15480 (OG975_15415) - 3416915..3418255 (-) 1341 WP_406329745.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62482.75 Da        Isoelectric Point: 5.5479

>NTDB_id=654403 OG975_RS15470 WP_406329743.1 3413030..3414763(+) (rcrP) [Streptomyces sp. NBC_00203]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISMAQVVCNIGAVYFGA
RTAAAVGRDIRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LIAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFRGANTELTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PTAPVVELRRHGHLEIREAGFRYPGAEEPVLRTIDLVALPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654403 OG975_RS15470 WP_406329743.1 3413030..3414763(+) (rcrP) [Streptomyces sp. NBC_00203]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACACTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGATACA
TCCTGAGCTTCGGCGCCGTGATGATCGGCATCTCGATGGCGCAGGTCGTCTGCAACATCGGGGCCGTGTACTTCGGCGCC
CGTACGGCGGCGGCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGATGTGCCGCTGTCCGCGGTG
CTGATCGCCGTGGTGCCGGTCCTCGGTATCGGCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTCTTCCGGACCATGCA
GGTCCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTGATCCGTGCCTTCGTGCGCGACG
GCTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTTCTCGGCACGAGCAGCAGCGTGGTCCCG
CCGACCGCGCCCGTCGTCGAGCTGCGCCGCCACGGCCACCTGGAGATCCGCGAGGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAGGACCATCGACCTGGTGGCCCTGCCCGGTGAGGTGACCGCCGTGATCGGTTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCCCCCGCCTCTTCGACGCCACCGACGGCGAGGTCCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCCAC
GAACCTCCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCAGCTGGAGAACGGCCTGGACTCCCCGATCGCGCAGGGCGGCACGAATGTGTCGGGAGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTCGACTATGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGACGGGTCGTCGGCGCCGGGCGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.519

100

0.399