Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG867_RS29180 Genome accession   NZ_CP108121
Coordinates   6436202..6437206 (-) Length   334 a.a.
NCBI ID   WP_328898974.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6431202..6442206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS29170 (OG867_29195) - 6431505..6432602 (+) 1098 WP_406289852.1 NADH:flavin oxidoreductase/NADH oxidase -
  OG867_RS29175 (OG867_29200) - 6432834..6436106 (+) 3273 WP_406289854.1 LamG-like jellyroll fold domain-containing protein -
  OG867_RS29180 (OG867_29205) cytR 6436202..6437206 (-) 1005 WP_328898974.1 LacI family DNA-binding transcriptional regulator Regulator
  OG867_RS29185 (OG867_29210) - 6437363..6438202 (+) 840 WP_406289856.1 phytanoyl-CoA dioxygenase family protein -
  OG867_RS29190 (OG867_29215) - 6438253..6440523 (-) 2271 WP_406291217.1 AbfB domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 34971.85 Da        Isoelectric Point: 6.5053

>NTDB_id=654292 OG867_RS29180 WP_328898974.1 6436202..6437206(-) (cytR) [Streptomyces sp. NBC_00209]
MAARLKDVAALAGVSVRTVSNVVSNTAAVAPGTRARVLAAVEELGYRPNLAARNLRQGRTGLIGVAVPEIHSPYFGALTG
LLIDAAQERGWTVLVERTGGRADLERRLLDGSEGHQVDGLIISPWSTPPAELSALAGGLPLVVLGELDPHGSIDHVALDN
VAAARDAARHLVATGRRRVAAIGLQSALGHGTAELRAEGFRRGLAEAGLSPVAEVEVADLHRAEGARALRELLELPERPD
AVFCFSDELALGALRAAGERGVRVPGDLALVGFDDIEDGRFATPSLTTVSPDPAQIAERAVQCLSERVLGRLSGLAARRI
VVPHRLLVRESSGA

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=654292 OG867_RS29180 WP_328898974.1 6436202..6437206(-) (cytR) [Streptomyces sp. NBC_00209]
GTGGCAGCGAGACTCAAGGACGTGGCCGCGCTCGCCGGTGTGTCCGTCAGGACCGTCTCCAACGTGGTGAGCAACACGGC
CGCCGTCGCCCCCGGCACCCGGGCCCGGGTGCTCGCCGCGGTGGAGGAGCTGGGCTACCGGCCCAACCTCGCCGCCCGCA
ACCTCCGCCAGGGCCGCACGGGGCTCATCGGGGTGGCCGTCCCGGAGATCCACTCCCCCTACTTCGGCGCGTTGACGGGC
CTCCTCATCGACGCCGCCCAGGAGCGCGGCTGGACGGTGCTCGTGGAGCGCACGGGGGGCCGGGCGGACCTGGAGCGGCG
GCTGCTGGACGGCTCCGAGGGGCACCAGGTGGACGGGCTGATCATCAGCCCCTGGTCGACGCCCCCCGCCGAACTGTCCG
CGCTCGCGGGCGGCCTGCCGCTCGTCGTCCTCGGCGAGCTCGATCCGCACGGGTCCATCGACCATGTGGCGCTGGACAAC
GTGGCGGCGGCCCGGGACGCCGCCCGGCATCTGGTGGCGACGGGCCGCCGGCGGGTCGCCGCGATCGGACTCCAGTCCGC
GCTGGGGCACGGCACGGCCGAGCTGCGGGCCGAGGGCTTCCGGCGGGGGCTCGCGGAGGCGGGGCTGAGCCCGGTTGCCG
AGGTGGAGGTGGCGGACCTGCACCGGGCGGAGGGGGCGCGGGCGCTGCGTGAGCTGCTGGAGCTGCCGGAGCGCCCGGAC
GCGGTGTTCTGCTTCAGCGACGAACTGGCCCTGGGGGCGCTGCGGGCGGCCGGTGAGCGGGGGGTGCGGGTGCCCGGGGA
CCTGGCGCTGGTGGGCTTTGACGACATCGAGGACGGGCGGTTCGCCACGCCTTCGCTGACCACGGTGTCGCCCGACCCGG
CGCAGATCGCGGAGCGGGCGGTGCAGTGTCTGAGCGAGCGCGTGCTCGGGCGGCTCTCGGGGCTGGCGGCGCGCCGGATC
GTGGTGCCGCACCGGCTGCTGGTGCGGGAGAGCAGCGGGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.095

100

0.365