Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG867_RS22640 Genome accession   NZ_CP108121
Coordinates   4987653..4988699 (+) Length   348 a.a.
NCBI ID   WP_406287917.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4982653..4993699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS22625 (OG867_22625) - 4983151..4984410 (+) 1260 WP_406287913.1 NAD(P)/FAD-dependent oxidoreductase -
  OG867_RS22630 (OG867_22630) - 4984532..4985485 (+) 954 WP_406287915.1 IS481 family transposase -
  OG867_RS22635 (OG867_22635) dnaG 4985592..4987499 (+) 1908 WP_328900075.1 DNA primase -
  OG867_RS22640 (OG867_22640) rpoS 4987653..4988699 (+) 1047 WP_406287917.1 RNA polymerase sigma factor Regulator
  OG867_RS22645 (OG867_22645) rcrQ 4988745..4990676 (-) 1932 WP_406287920.1 ABC transporter ATP-binding protein Regulator
  OG867_RS22650 (OG867_22650) rcrP 4990676..4992409 (-) 1734 WP_328900072.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 39273.89 Da        Isoelectric Point: 6.1995

>NTDB_id=654276 OG867_RS22640 WP_406287917.1 4987653..4988699(+) (rpoS) [Streptomyces sp. NBC_00209]
MQTRTVTEAERAPAVPVQARAAHHPEGVMEEPDEPPEPRGRPEAAGPTSDLFRQYLREIGRIPLLTAADEVELARCIEAG
LFAEERLARTPDPDTRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARG
YKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAHLDLTPERVGEILRLAQEP
VSLHAPVGEEEDVSLGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLVDGRPRTLEEIGRIFGVTR
ERIRQIESRTLSRLRDHASADQLRGYLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=654276 OG867_RS22640 WP_406287917.1 4987653..4988699(+) (rpoS) [Streptomyces sp. NBC_00209]
GTGCAGACCCGGACCGTCACCGAAGCCGAGCGCGCCCCGGCCGTCCCCGTACAGGCCAGGGCGGCGCACCACCCCGAGGG
GGTCATGGAGGAGCCGGACGAGCCCCCGGAGCCGCGCGGGAGACCGGAGGCCGCCGGGCCCACCTCGGACCTGTTCCGCC
AGTACCTGCGCGAGATCGGGCGCATCCCGCTGCTCACCGCCGCCGACGAGGTGGAGCTCGCCCGGTGCATCGAGGCCGGC
CTGTTCGCCGAGGAACGCCTCGCCCGCACCCCGGACCCCGACACCCGCCTGGCCGTCGACCTGGACCGGCTCGTCGTCAT
GGGCCGCATGGCCAAGCGCCGCCTCATCGAGGCCAACCTGCGCCTCGTCGTCTCCGTCGCCAAGCGCTACGTGGGCCGCG
GCCTGACCATGCTCGACCTCGTCCAGGAGGGGAACCTCGGGCTGATCCGCGCCGTCGAGAAGTTCGACTACGCGCGCGGC
TACAAGTTCTCGACGTACGCGACCTGGTGGATACGGCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGGACCATAAG
GGTCCCGGTCCACGTCGTGGAGCTGATCAACCGCGTCGTCCGGGTCCAGCGCCGCATGCTCCAGGAACGCGGCTACGAGC
CCACCCCCGAGGAGGTCGCCGCCCACCTCGACCTGACGCCCGAACGGGTCGGCGAGATCCTGCGCCTGGCCCAGGAACCC
GTCTCGCTGCACGCCCCGGTCGGCGAGGAGGAGGACGTCTCGCTCGGCGACCTCATCGAGGACGGGGACGCCGCGTCCCC
CGTGGAGTCGGCCGCCTTCCTGCTGCTGCGCCAGCACCTGGAAGCGGTGCTCTCCACCCTGGGCGAGCGCGAACGCAAGG
TGGTCCAGCTGCGCTACGGGCTGGTCGACGGGCGGCCCCGCACCCTGGAGGAGATCGGCCGCATCTTCGGCGTGACGCGC
GAACGCATACGCCAGATCGAGTCCAGGACCCTCAGCAGACTGCGCGACCACGCCTCCGCCGACCAGCTCCGCGGCTACCT
CGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(194-270)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(50-83)

Sigma-70 region 2 (Sigma70_r2)

(115-184)

Sigma-70, region 4 (Sigma70_r4)

(283-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

43.197

84.483

0.365