Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG867_RS14255 Genome accession   NZ_CP108121
Coordinates   3174773..3175426 (+) Length   217 a.a.
NCBI ID   WP_406285583.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3169773..3180426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS14235 (OG867_14245) - 3170983..3172056 (-) 1074 WP_406290955.1 hypothetical protein -
  OG867_RS14240 (OG867_14250) - 3172098..3172727 (-) 630 WP_328901425.1 ankyrin repeat domain-containing protein -
  OG867_RS14245 (OG867_14255) - 3172759..3173316 (-) 558 WP_328901424.1 heme-binding protein -
  OG867_RS14250 (OG867_14260) - 3173547..3174776 (+) 1230 WP_406285581.1 sensor histidine kinase -
  OG867_RS14255 (OG867_14265) vraR 3174773..3175426 (+) 654 WP_406285583.1 response regulator Regulator
  OG867_RS14260 (OG867_14270) - 3175480..3175977 (+) 498 WP_265542672.1 hypothetical protein -
  OG867_RS14265 (OG867_14275) - 3175996..3176676 (-) 681 WP_328901420.1 pentapeptide repeat-containing protein -
  OG867_RS14270 (OG867_14280) - 3176718..3177194 (-) 477 WP_406285587.1 GNAT family N-acetyltransferase -
  OG867_RS14275 (OG867_14285) - 3177226..3178164 (-) 939 WP_406285590.1 aminoglycoside phosphotransferase family protein -
  OG867_RS14280 (OG867_14290) - 3178198..3178857 (+) 660 WP_328904404.1 rhomboid-like protein -
  OG867_RS14290 (OG867_14300) - 3179147..3180283 (+) 1137 WP_328901417.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23059.42 Da        Isoelectric Point: 5.7801

>NTDB_id=654253 OG867_RS14255 WP_406285583.1 3174773..3175426(+) (vraR) [Streptomyces sp. NBC_00209]
MTADRTTDMSADRIRILLCDDHAVVRAGLLALLGSEPDIEVVGEAGSGEEAVALAARLAPDVVLMDLQLGTGIDGVEATR
RIAAGPGTHVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRSAAQGRTTLSPPVASRVMARMRAPRPTLTDRE
RDILGQLSRGLGNREIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLLP

Nucleotide


Download         Length: 654 bp        

>NTDB_id=654253 OG867_RS14255 WP_406285583.1 3174773..3175426(+) (vraR) [Streptomyces sp. NBC_00209]
ATGACCGCCGACAGGACCACAGACATGAGCGCCGACCGCATCCGCATCCTGCTCTGCGACGACCACGCCGTCGTACGCGC
CGGGCTCCTCGCCCTCCTCGGCAGCGAACCCGACATCGAGGTCGTCGGCGAGGCGGGCAGCGGCGAGGAGGCCGTGGCAC
TCGCCGCCCGGCTCGCCCCCGACGTCGTCCTGATGGACCTCCAGCTCGGCACCGGCATCGACGGCGTCGAAGCGACCCGC
CGCATCGCGGCCGGCCCCGGCACCCACGTCCTCGTCCTCACCACGTACGACACCGACGCCGACATCACGCGCGCCATCGA
GGCGGGCGCCACCGGCTACCTGCTCAAGGCCGAACGCCCCGAGGAGCTGTTCGCCGCGATCCGCTCCGCCGCCCAGGGCC
GCACCACGCTCTCCCCGCCCGTCGCCAGCCGCGTGATGGCCCGCATGCGCGCACCCCGCCCCACGCTCACCGACCGCGAA
CGCGACATCCTCGGCCAGCTCTCCCGGGGCCTCGGCAACCGCGAGATCGCCCGTGCCCTGTTCATCAGCGAGGCCACGGT
CAAGACGCACCTGGGCCGCATCTACGACAAGCTCGGCGTCGACACCCGCGCCGGAGCCGTCGCCGTCGCCAAGGAACAGC
GCCTGCTGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(16-128)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.58

95.392

0.387