Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG867_RS07130 Genome accession   NZ_CP108121
Coordinates   1654312..1655502 (-) Length   396 a.a.
NCBI ID   WP_406283680.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1649312..1660502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS07110 (OG867_07115) - 1649527..1649865 (-) 339 WP_018102395.1 P-II family nitrogen regulator -
  OG867_RS07115 (OG867_07120) - 1649862..1651208 (-) 1347 WP_406283676.1 ammonium transporter -
  OG867_RS07120 (OG867_07125) - 1651746..1653218 (-) 1473 WP_328902626.1 hypothetical protein -
  OG867_RS07125 (OG867_07130) - 1653580..1654239 (+) 660 WP_406283678.1 bifunctional DNA primase/polymerase -
  OG867_RS07130 (OG867_07135) pilA 1654312..1655502 (-) 1191 WP_406283680.1 signal recognition particle-docking protein FtsY Machinery gene
  OG867_RS07135 (OG867_07140) - 1655627..1657006 (+) 1380 WP_406283682.1 purine-cytosine permease family protein -
  OG867_RS07140 (OG867_07145) - 1657003..1658427 (-) 1425 WP_406283684.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 41799.75 Da        Isoelectric Point: 4.4409

>NTDB_id=654239 OG867_RS07130 WP_406283680.1 1654312..1655502(-) (pilA) [Streptomyces sp. NBC_00209]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTLTPPAEPRVGEEAEEPREESRRTIEDVAAPPAEAEPETVE
PEAPALDVPEPTAGRLVRLRARLARSQNTLGKGLLALLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRERVRVLG
TRTPEELRTLLREELLTLLGTDFDRAVKTEGGLETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAAAA
DQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEVLLVL
DATTGQNGLVQARVFAEVVAITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALIGD

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=654239 OG867_RS07130 WP_406283680.1 1654312..1655502(-) (pilA) [Streptomyces sp. NBC_00209]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCCTCACACCTCCCGCCGAGCCCCGTGTCGGCGAGGAGGCCG
AAGAGCCGCGCGAGGAATCGCGCCGCACCATCGAGGACGTCGCGGCCCCGCCCGCCGAGGCCGAGCCGGAGACGGTGGAG
CCGGAAGCCCCCGCGCTCGACGTCCCCGAGCCCACCGCCGGCCGGCTCGTCCGGCTGCGCGCCCGCCTCGCCCGCTCGCA
GAACACCCTCGGCAAGGGGCTCCTCGCGCTCCTGTCCCGGGACAATCTGGACGAGGACACCTGGGAGGAGATCGAGGACA
CCCTCCTCACCGCCGACGTCGGCGTCGCCCCCACCCAGGAGCTGGTCGAGCGCCTGCGCGAGCGCGTCCGGGTGCTCGGT
ACCCGCACCCCCGAGGAGCTGCGCACCCTGCTCCGCGAGGAGCTGCTCACCCTGCTCGGCACCGACTTCGACCGTGCGGT
GAAGACGGAGGGCGGTCTGGAGACCCCCGGCGTCGTGATGGTCGTCGGCGTCAACGGCACCGGCAAGACCACCACCACCG
GCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCGGCCGACACCTTCCGCGCCGCCGCCGCC
GACCAGCTCCAGACCTGGGGCGAGCGTGTCGGCGCCCGCACCGTGCGCGGTCCGGAGGGCGGCGACCCGGCGTCCATCGC
CTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCGACACCGCCGGCCGGCTGCACACCAAGA
CCGGGCTCATGGACGAGCTGGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGCCCGCTGGACGAGGTGCTGCTCGTCCTG
GACGCCACCACCGGACAGAACGGCCTCGTGCAGGCGCGGGTCTTCGCCGAGGTGGTCGCCATCACCGGCATCGTCCTCAC
CAAGCTGGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTTCCGGTCAAGCTCGTCGGAC
TCGGCGAGGGCCCGGACGACCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCGCTGATCGGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(197-394)

SRP54-type protein, helical bundle domain (SRP54_N)

(110-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.53

92.424

0.384