Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG867_RS06345 Genome accession   NZ_CP108121
Coordinates   1467254..1468048 (+) Length   264 a.a.
NCBI ID   WP_405939185.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00209     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1462254..1473048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG867_RS06330 (OG867_06340) - 1462559..1463095 (+) 537 WP_406283478.1 TerD family protein -
  OG867_RS06335 (OG867_06345) - 1463158..1466061 (-) 2904 WP_328902756.1 vitamin B12-dependent ribonucleotide reductase -
  OG867_RS06340 (OG867_06350) nrdR 1466226..1466738 (-) 513 WP_328902755.1 transcriptional regulator NrdR -
  OG867_RS06345 (OG867_06355) dinR/lexA 1467254..1468048 (+) 795 WP_405939185.1 transcriptional repressor LexA Regulator
  OG867_RS06350 (OG867_06360) - 1468159..1470129 (-) 1971 WP_406283482.1 ATP-dependent DNA helicase -
  OG867_RS06355 (OG867_06365) - 1470180..1472015 (-) 1836 WP_406283484.1 IucA/IucC family protein -
  OG867_RS06360 (OG867_06370) - 1472076..1472732 (-) 657 WP_406290795.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=654233 OG867_RS06345 WP_405939185.1 1467254..1468048(+) (dinR/lexA) [Streptomyces sp. NBC_00209]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTESPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=654233 OG867_RS06345 WP_405939185.1 1467254..1468048(+) (dinR/lexA) [Streptomyces sp. NBC_00209]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGAGCCCGGAGCCCGGGCGCCCAGCGCGCTCGCTCCCCGGACGACCTCCCGGAATCCGGG
CGGACAGCTCGGGGCTCACTGACCGGCAGCGGCGGGTGATCGAGGTCATCCGGGATTCCGTGCAGCGGCGCGGCTATCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTCTCCAGCACTTCCTCCGTCGCCCATCAGCTGATGGCTCTGGAGCG
CAAGGGCTTCCTGCGTCGCGACCCCCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCACGCAGCCGA
CGGACACCACGGGCAAGCCCGCCGCCTCGTACGTACCGCTGGTGGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTGGGGGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTTCCGCACAAC
GCCGCCTACCAGCCGATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTGCTGCGCAGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371