Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L8956_RS16785 Genome accession   NZ_CP091882
Coordinates   3553283..3554998 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain JHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3548283..3559998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8956_RS16760 (L8956_16760) - 3548323..3548559 (+) 237 WP_034308264.1 DUF2627 domain-containing protein -
  L8956_RS16765 (L8956_16765) - 3548856..3549519 (+) 664 Protein_3277 transposase -
  L8956_RS16770 (L8956_16770) - 3549557..3550291 (-) 735 WP_239858470.1 glycerophosphodiester phosphodiesterase -
  L8956_RS16775 (L8956_16775) spo0A 3550708..3551499 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  L8956_RS16780 (L8956_16780) spoIVB 3551829..3553121 (-) 1293 WP_057278790.1 SpoIVB peptidase -
  L8956_RS16785 (L8956_16785) recN 3553283..3554998 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  L8956_RS16790 (L8956_16790) argR 3555021..3555470 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  L8956_RS16795 (L8956_16795) - 3555714..3556541 (-) 828 WP_057278791.1 TlyA family RNA methyltransferase -
  L8956_RS16800 (L8956_16800) dxs 3556546..3558438 (-) 1893 WP_239858471.1 1-deoxy-D-xylulose-5-phosphate synthase -
  L8956_RS16805 (L8956_16805) - 3558688..3559581 (-) 894 WP_057278792.1 polyprenyl synthetase family protein -
  L8956_RS16810 (L8956_16810) - 3559583..3559816 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=654231 L8956_RS16785 WP_048681817.1 3553283..3554998(-) (recN) [Peribacillus frigoritolerans strain JHS1]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=654231 L8956_RS16785 WP_048681817.1 3553283..3554998(-) (recN) [Peribacillus frigoritolerans strain JHS1]
TTGTTAACAGAACTTTCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTGTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTTCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATTTCACAAAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTGGTGACGATTTCCACTTTGCGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGGTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGACGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATCTATATATGGAAAAAACAATTTTTGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGGATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGGATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTTATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613