Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG729_RS38130 Genome accession   NZ_CP108120
Coordinates   8505000..8505662 (+) Length   220 a.a.
NCBI ID   WP_405810696.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8500000..8510662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS38115 (OG729_38105) - 8501416..8502390 (-) 975 WP_405810695.1 NAD(P)-dependent alcohol dehydrogenase -
  OG729_RS38120 (OG729_38110) - 8502658..8503458 (-) 801 WP_360875103.1 class I SAM-dependent methyltransferase -
  OG729_RS38125 (OG729_38115) - 8503822..8505003 (+) 1182 WP_405811431.1 sensor histidine kinase -
  OG729_RS38130 (OG729_38120) vraR 8505000..8505662 (+) 663 WP_405810696.1 response regulator Regulator
  OG729_RS38135 (OG729_38125) - 8505736..8506038 (-) 303 WP_360875098.1 hypothetical protein -
  OG729_RS38140 (OG729_38130) - 8506519..8506670 (-) 152 Protein_7539 transposase -
  OG729_RS38145 (OG729_38135) - 8506878..8508110 (+) 1233 WP_405810697.1 glycosyltransferase -
  OG729_RS38150 (OG729_38140) - 8508326..8508508 (-) 183 WP_360875092.1 hypothetical protein -
  OG729_RS38155 (OG729_38145) - 8509405..8509614 (+) 210 WP_405810699.1 hypothetical protein -
  OG729_RS38160 (OG729_38150) - 8509804..8510073 (+) 270 WP_405810700.1 WhiB family transcriptional regulator -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23354.77 Da        Isoelectric Point: 5.7810

>NTDB_id=654220 OG729_RS38130 WP_405810696.1 8505000..8505662(+) (vraR) [Streptomyces sp. NBC_00210]
MSPQESASPIRLLLCDDHAVVRAGLRALLSSTDGIEVVGEAGSGEEALAVAARVRPDVVLMDLQLGGGMDGVTATRHLSF
GDGEGPDTPTPRVLVLTMFDTDADITRAIEAGATGYLLKAERPEELFAAIRNAASGRTALSAPIADRVLAQMRSPRPALS
ERERDILQQLALGLGNREIARALFISEATVKTHLRRIYGKLGVETRAGAVALAKEQRLLP

Nucleotide


Download         Length: 663 bp        

>NTDB_id=654220 OG729_RS38130 WP_405810696.1 8505000..8505662(+) (vraR) [Streptomyces sp. NBC_00210]
GTGAGCCCCCAGGAGTCCGCCTCGCCGATCCGGCTGCTGCTGTGCGACGACCATGCCGTGGTACGTGCCGGGCTGCGCGC
GCTGCTGTCCAGCACCGACGGCATCGAGGTGGTCGGTGAGGCGGGCAGCGGCGAGGAGGCTCTCGCCGTGGCAGCCCGCG
TGCGACCCGACGTCGTGTTGATGGACCTCCAGCTCGGCGGCGGCATGGACGGCGTGACAGCCACCCGTCATCTGTCGTTC
GGTGACGGAGAGGGTCCCGACACGCCGACCCCACGCGTGCTGGTGCTCACCATGTTCGACACCGACGCCGACATCACCCG
CGCCATCGAAGCGGGCGCCACCGGCTACCTGCTCAAGGCCGAACGGCCGGAAGAGCTGTTCGCGGCGATCCGGAACGCGG
CATCCGGCCGCACCGCACTCTCGGCTCCGATCGCCGACCGGGTGCTGGCCCAGATGCGCAGCCCGCGCCCCGCTCTGTCG
GAGCGCGAGCGCGACATCCTCCAGCAGCTGGCACTGGGCCTGGGCAACCGCGAGATCGCCCGAGCCCTGTTCATCAGCGA
GGCCACGGTCAAAACCCACCTGCGACGGATCTACGGCAAGCTGGGGGTGGAGACCCGAGCGGGGGCGGTGGCGCTCGCCA
AAGAGCAGCGATTGCTGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(13-131)

Bacterial regulatory proteins, luxR family (GerE)

(158-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.498

96.818

0.373