Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L8956_RS00560 Genome accession   NZ_CP091882
Coordinates   105906..107294 (+) Length   462 a.a.
NCBI ID   WP_053537036.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain JHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 100906..112294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L8956_RS00540 (L8956_00540) - 101028..101489 (+) 462 WP_034305095.1 CtsR family transcriptional regulator -
  L8956_RS00545 (L8956_00545) - 101511..102062 (+) 552 WP_034305093.1 UvrB/UvrC motif-containing protein -
  L8956_RS00550 (L8956_00550) - 102059..103135 (+) 1077 WP_057276466.1 protein arginine kinase -
  L8956_RS00555 (L8956_00555) clpC 103266..105707 (+) 2442 WP_034305090.1 ATP-dependent protease ATP-binding subunit ClpC -
  L8956_RS00560 (L8956_00560) radA 105906..107294 (+) 1389 WP_053537036.1 DNA repair protein RadA Machinery gene
  L8956_RS00565 (L8956_00565) disA 107297..108370 (+) 1074 WP_034305085.1 DNA integrity scanning diadenylate cyclase DisA -
  L8956_RS00570 (L8956_00570) - 108596..109675 (+) 1080 WP_096340940.1 PIN/TRAM domain-containing protein -
  L8956_RS00575 (L8956_00575) ispD 109697..110386 (+) 690 WP_230134327.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  L8956_RS00580 (L8956_00580) ispF 110401..110880 (+) 480 WP_057276469.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50244.91 Da        Isoelectric Point: 8.2388

>NTDB_id=654215 L8956_RS00560 WP_053537036.1 105906..107294(+) (radA) [Peribacillus frigoritolerans strain JHS1]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRVSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYSETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIIGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=654215 L8956_RS00560 WP_053537036.1 105906..107294(+) (radA) [Peribacillus frigoritolerans strain JHS1]
ATGGCTGTAAAAAAGAAAACAAAATTTATGTGTCAATCTTGTGGGTATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCAAGAAAAGGCGCTTTTACCCATTCAGAGG
TTAGAGTTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACCATTCAGTCAGAAAAAGAACCACGCATTAAGACGGAT
CTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTCTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACAATGTCGGAAAATCTATTCGTTTATTCTGAAACCGATATG
GACTATATCCAACAGGCAATTACAGACGTTAAACCGGATTTGGTCATTATTGACTCGATTCAAACGGTTTACCATTCAGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGTCACGTTACAAAAGAAGGGGCCATTGCGGGACCACGGCTGCTTGAGCACATGGTTGACACC
GTATTATATTTTGAAGGGGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACTAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTGGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGGTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGCAATCCGAGGCGGATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTCCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGCGGTGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGTGAAGTGAGAAGGGTGTCACGAATTGAACAAAGGGTGCAGGAAGCCGCGAAATTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGAGGGTGGACCGCGCCGAAAGGTATTAAGATCATTGGTGTTTCATCGGTTTCTG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

99.567

0.775
  radA Streptococcus mitis NCTC 12261

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608
  radA Streptococcus pneumoniae TIGR4

61.538

98.485

0.606
  radA Streptococcus pneumoniae R6

61.538

98.485

0.606
  radA Streptococcus pneumoniae Rx1

61.538

98.485

0.606
  radA Streptococcus pneumoniae D39

61.538

98.485

0.606