Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG729_RS09975 Genome accession   NZ_CP108120
Coordinates   2217604..2218278 (-) Length   224 a.a.
NCBI ID   WP_405805598.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2212604..2223278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS09955 (OG729_09945) - 2212944..2214587 (+) 1644 WP_405805596.1 ATP-binding protein -
  OG729_RS09960 (OG729_09950) - 2214620..2215312 (+) 693 WP_360870509.1 response regulator -
  OG729_RS09965 (OG729_09955) - 2215421..2217013 (-) 1593 WP_360870130.1 cation acetate symporter -
  OG729_RS09970 (OG729_09960) - 2217010..2217507 (-) 498 WP_360870127.1 DUF485 domain-containing protein -
  OG729_RS09975 (OG729_09965) vraR 2217604..2218278 (-) 675 WP_405805598.1 response regulator Regulator
  OG729_RS09980 (OG729_09970) - 2218275..2219435 (-) 1161 WP_405805600.1 sensor histidine kinase -
  OG729_RS09985 (OG729_09975) - 2219586..2221703 (-) 2118 WP_360870118.1 DNA topoisomerase IV subunit B -
  OG729_RS09990 (OG729_09980) - 2222137..2222367 (+) 231 WP_307660675.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23903.36 Da        Isoelectric Point: 5.1308

>NTDB_id=654158 OG729_RS09975 WP_405805598.1 2217604..2218278(-) (vraR) [Streptomyces sp. NBC_00210]
MTEQIARVIVADDQAVVREGIVMLLGLLPGIEVIGSAKDGEEAVALVAELAPDVVLMDLRMPRCDGIEATRRIRSEHPGT
QIVVLTTYADDDSLFPALRAGARGYLTKDANGDEIVRAVQDVMAGRAGLSPVVQRRLLEQVASAPEPSGPKLPDGLTARE
GEVLALIAEGLTNAEIARGLHISTATVKTHINNLFSKTGIHDRAQAVRYAYREGLTRPPGSNIT

Nucleotide


Download         Length: 675 bp        

>NTDB_id=654158 OG729_RS09975 WP_405805598.1 2217604..2218278(-) (vraR) [Streptomyces sp. NBC_00210]
ATGACCGAACAGATCGCCAGAGTGATCGTTGCCGACGATCAGGCGGTGGTGCGCGAGGGCATTGTGATGCTCCTGGGACT
GCTGCCGGGCATCGAGGTCATCGGCTCGGCGAAGGACGGTGAGGAGGCGGTCGCCCTCGTTGCCGAACTCGCCCCCGACG
TCGTCCTGATGGACCTTCGGATGCCCCGCTGCGACGGGATCGAGGCGACCCGCCGTATTCGCAGCGAACACCCCGGCACC
CAGATCGTCGTGCTCACCACCTATGCCGACGACGACTCGCTCTTTCCCGCGCTACGGGCGGGAGCGCGCGGCTATCTCAC
CAAGGACGCCAACGGCGACGAGATCGTACGGGCCGTGCAGGATGTCATGGCCGGTCGTGCCGGGCTCTCACCGGTCGTCC
AGCGACGGCTCCTTGAGCAGGTCGCATCGGCGCCGGAACCGTCCGGGCCGAAGCTGCCCGACGGGCTGACCGCGCGCGAG
GGCGAGGTGCTGGCCCTGATCGCGGAGGGCCTCACCAACGCGGAAATCGCCCGGGGACTGCACATCTCCACGGCCACCGT
GAAGACCCACATCAACAACCTCTTCTCGAAGACGGGCATTCACGACCGCGCCCAGGCGGTGCGGTACGCCTACCGCGAAG
GACTTACGCGGCCACCCGGGTCGAATATCACCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.389

94.196

0.362