Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG729_RS07525 Genome accession   NZ_CP108120
Coordinates   1668380..1669051 (-) Length   223 a.a.
NCBI ID   WP_360879032.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00210     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1663380..1674051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG729_RS07500 (OG729_07495) - 1663548..1664546 (-) 999 WP_360879019.1 sugar ABC transporter substrate-binding protein -
  OG729_RS07505 (OG729_07500) - 1664770..1665507 (-) 738 WP_360879144.1 GntR family transcriptional regulator -
  OG729_RS07510 (OG729_07505) - 1665645..1666649 (+) 1005 WP_360879022.1 Gfo/Idh/MocA family oxidoreductase -
  OG729_RS07515 (OG729_07510) - 1666745..1667938 (-) 1194 WP_405805065.1 cytochrome P450 -
  OG729_RS07520 (OG729_07515) - 1667954..1668370 (-) 417 WP_405805067.1 PaaI family thioesterase -
  OG729_RS07525 (OG729_07520) vraR 1668380..1669051 (-) 672 WP_360879032.1 response regulator transcription factor Regulator
  OG729_RS07530 (OG729_07525) - 1669048..1670280 (-) 1233 WP_360879035.1 histidine kinase -
  OG729_RS07535 (OG729_07530) - 1670426..1670644 (+) 219 WP_405805069.1 hypothetical protein -
  OG729_RS07540 (OG729_07535) - 1670725..1671342 (-) 618 WP_360879041.1 dihydrofolate reductase family protein -
  OG729_RS07545 (OG729_07540) alc 1671589..1672704 (-) 1116 WP_360879147.1 allantoicase -
  OG729_RS07550 (OG729_07545) allB 1672704..1674047 (-) 1344 WP_405805071.1 allantoinase AllB -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23798.23 Da        Isoelectric Point: 4.5905

>NTDB_id=654152 OG729_RS07525 WP_360879032.1 1668380..1669051(-) (vraR) [Streptomyces sp. NBC_00210]
MTIRLLVVDDDPLVRAGLSFMLGGADDLEIVGEGADGSEAAELVDRLAPDVVLMDIRMPTMDGLTATELLRARQDAPEVV
VLTTFHADEQVLRALRAGAAGFVLKDTPPAEIVAAVRRVAAGDPVLSPAVTRQLMTHVADRTPGTRRSTAAERLSSLAER
EREVAVAVGRGQSNAEIAATLYMSVPTVKTHVSRILAKLDLNNRVQIALLAHDAGLLDEEEQP

Nucleotide


Download         Length: 672 bp        

>NTDB_id=654152 OG729_RS07525 WP_360879032.1 1668380..1669051(-) (vraR) [Streptomyces sp. NBC_00210]
ATGACTATCCGGTTGCTCGTCGTCGATGACGACCCCCTCGTACGGGCTGGGCTCTCCTTCATGCTCGGCGGGGCCGACGA
CCTCGAAATCGTGGGGGAGGGGGCCGACGGCTCCGAGGCCGCCGAGCTCGTCGACAGACTCGCGCCCGATGTGGTGCTGA
TGGACATCCGGATGCCGACGATGGACGGCCTCACCGCCACCGAGCTGCTGCGCGCACGCCAGGACGCCCCCGAAGTCGTC
GTCCTCACCACCTTCCACGCCGACGAACAGGTGCTGCGGGCGCTGCGCGCGGGCGCCGCCGGATTCGTACTGAAGGACAC
CCCGCCCGCCGAGATCGTCGCCGCGGTACGACGCGTCGCGGCGGGCGATCCGGTGCTCTCCCCGGCCGTCACCCGACAGT
TGATGACCCATGTCGCCGACCGCACCCCCGGTACCCGCCGCAGCACGGCGGCGGAGCGGCTCAGCTCGCTCGCCGAGCGC
GAGCGGGAGGTGGCGGTCGCCGTCGGCCGCGGTCAGTCCAACGCCGAGATCGCCGCGACCCTCTATATGAGCGTGCCGAC
CGTCAAGACGCATGTCTCCCGGATTCTGGCAAAACTGGACCTCAACAACCGTGTCCAGATCGCACTGTTGGCACATGACG
CCGGCCTGCTCGACGAGGAGGAACAGCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.726

98.206

0.39