Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG820_RS23045 Genome accession   NZ_CP108118
Coordinates   4962883..4963860 (+) Length   325 a.a.
NCBI ID   WP_327283863.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00211     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4957883..4968860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG820_RS23025 (OG820_22985) - 4958031..4958510 (-) 480 WP_327283867.1 RidA family protein -
  OG820_RS23030 (OG820_22990) - 4958558..4959835 (-) 1278 WP_328763022.1 M6 family metalloprotease domain-containing protein -
  OG820_RS23035 (OG820_22995) - 4960080..4960784 (+) 705 WP_327283865.1 TetR/AcrR family transcriptional regulator -
  OG820_RS23040 (OG820_23000) - 4960878..4962419 (+) 1542 WP_406387370.1 MFS transporter -
  OG820_RS23045 (OG820_23005) rpoS 4962883..4963860 (+) 978 WP_327283863.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG820_RS23050 (OG820_23010) - 4963929..4964885 (-) 957 WP_327283862.1 YafY family protein -
  OG820_RS23055 (OG820_23015) - 4964950..4966446 (+) 1497 WP_327283861.1 MFS transporter -
  OG820_RS23060 (OG820_23020) - 4966590..4967348 (+) 759 WP_371643819.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG820_RS23065 (OG820_23025) pfkB 4967345..4968295 (+) 951 WP_406387373.1 1-phosphofructokinase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36553.23 Da        Isoelectric Point: 4.8419

>NTDB_id=654113 OG820_RS23045 WP_327283863.1 4962883..4963860(+) (rpoS) [Streptomyces sp. NBC_00211]
MATRAVARRQSRGSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGETECEGETPAREELE
ALAAEGERAKEIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPDHAEIAAELDSTEKRVGDVLDWARDPVSLNMSVDDEGETQFGDLLEDT
SAVSPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=654113 OG820_RS23045 WP_327283863.1 4962883..4963860(+) (rpoS) [Streptomyces sp. NBC_00211]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCAGGGGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGCGACCT
GGTGGGCATGTACCTGGACGAGATCGCGCGTACCCCGCTGCTCGACGCGGCCAAGGAAGTGGAGCTCTCACAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGTGAGACGGAGTGCGAGGGCGAGACGCCGGCGCGCGAGGAGCTGGAA
GCCCTGGCCGCGGAAGGGGAGCGCGCCAAGGAGATCTTCATCCGCTCCAACCTCCGCCTGGTCGTGGCCGTCGCCCGCCG
CTACCCGCGCAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAATGCCGGCCTGGTGCGCGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAACTCGGCCGCATCCGCCGCATCCAGCGCGAGTTCAACCGCGA
GAACGGCCGGGACCCGGACCACGCGGAGATCGCCGCCGAGCTGGACTCGACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCCCGCGACCCGGTCAGCCTGAACATGTCCGTGGACGACGAGGGCGAGACCCAGTTCGGCGACCTCCTCGAAGACACC
TCCGCGGTCTCCCCGGAGCAGTCCGTCCTGTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGAAGACGGCCGCGAGCGGACCCTGACGGAGGTCGGCAAGCAGC
ACGGGCTCACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCCCTTTTGGAACTGAAGCGCATGGCCCGCGACACCGGC
TTCGACGCAGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(261-313)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39

92.308

0.36