Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG820_RS03590 Genome accession   NZ_CP108118
Coordinates   706187..706852 (-) Length   221 a.a.
NCBI ID   WP_406386131.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00211     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 701187..711852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG820_RS03555 (OG820_03545) - 701381..702133 (-) 753 WP_327280341.1 LysR family transcriptional regulator substrate-binding protein -
  OG820_RS03560 (OG820_03550) - 702303..702707 (+) 405 WP_327280340.1 DUF5997 family protein -
  OG820_RS03565 (OG820_03555) - 702791..703513 (+) 723 WP_329315818.1 beta-glucanase -
  OG820_RS03570 (OG820_03560) - 703510..704178 (-) 669 WP_328764747.1 hemerythrin domain-containing protein -
  OG820_RS03575 (OG820_03565) - 704300..705058 (-) 759 WP_327280337.1 carbonic anhydrase -
  OG820_RS03580 (OG820_03570) - 705220..705726 (+) 507 WP_327280336.1 GNAT family N-acetyltransferase -
  OG820_RS03585 (OG820_03575) - 705769..706068 (-) 300 WP_327280335.1 SHOCT domain-containing protein -
  OG820_RS03590 (OG820_03580) vraR 706187..706852 (-) 666 WP_406386131.1 response regulator Regulator
  OG820_RS03595 (OG820_03585) - 706849..708045 (-) 1197 WP_406386133.1 sensor histidine kinase -
  OG820_RS03600 (OG820_03590) - 708055..708987 (-) 933 WP_405758706.1 serine hydrolase -
  OG820_RS03605 (OG820_03595) - 708984..709952 (-) 969 WP_406386135.1 LysR family transcriptional regulator -
  OG820_RS03610 (OG820_03600) - 710038..711039 (+) 1002 WP_405763342.1 alpha/beta hydrolase family esterase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23839.63 Da        Isoelectric Point: 4.7984

>NTDB_id=654066 OG820_RS03590 WP_406386131.1 706187..706852(-) (vraR) [Streptomyces sp. NBC_00211]
MIRVLLADDQALVRAGFRALLDAQPDIEVAGEAADGVEAVRLARELRPDIALMDIRMPELDGLAATRTITGDPGLGAVKV
VMLTTFELDEYVFEAIRSGASGFLVKDTEPEELLRAVRAVVAGDALLSPGVTRRLIGEFAARSKAPEAAAELERLTERER
EVMALVGMGLSNEEIARRLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLVRPGWLG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=654066 OG820_RS03590 WP_406386131.1 706187..706852(-) (vraR) [Streptomyces sp. NBC_00211]
TTGATCCGGGTACTGCTCGCCGACGACCAGGCGCTGGTACGGGCCGGCTTCCGCGCGCTGCTGGACGCGCAGCCGGACAT
CGAGGTCGCGGGCGAGGCCGCCGACGGGGTCGAGGCCGTGCGCCTGGCACGCGAACTGCGCCCGGACATCGCCCTGATGG
ACATCCGGATGCCGGAGCTCGACGGCCTGGCCGCCACCCGCACGATCACCGGGGACCCGGGGCTGGGCGCCGTGAAGGTG
GTCATGCTGACCACCTTCGAGCTCGACGAGTACGTCTTCGAGGCGATCCGCTCCGGCGCGTCCGGCTTCCTGGTCAAGGA
CACCGAGCCGGAGGAACTGCTGCGCGCCGTACGGGCGGTGGTCGCCGGAGACGCGCTGCTCTCACCCGGGGTGACGCGCC
GCCTGATCGGCGAGTTCGCGGCCCGCTCCAAGGCCCCGGAGGCGGCGGCGGAGCTGGAGCGGCTGACCGAGCGGGAGCGC
GAGGTGATGGCCCTGGTCGGGATGGGCCTGTCCAACGAGGAGATCGCCCGCCGGCTCGTGGTCAGTCCGCTGACCGCGAA
GACGCACGTCAGCCGCACCATGATCAAGCTGGGTGCCCGCGACCGGGCCCAGCTGGTGGTGCTCGCCTACGAGTCGGGGC
TGGTCCGGCCCGGCTGGCTCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.07

97.285

0.38