Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS36120 Genome accession   NZ_CP108115
Coordinates   7908673..7909383 (-) Length   236 a.a.
NCBI ID   WP_406510001.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7903673..7914383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS36105 (OHA17_36040) - 7904175..7905743 (+) 1569 WP_406509999.1 oleate hydratase -
  OHA17_RS36110 (OHA17_36045) - 7905846..7906475 (+) 630 WP_406510000.1 TetR/AcrR family transcriptional regulator -
  OHA17_RS36115 (OHA17_36050) - 7906591..7908640 (+) 2050 Protein_7124 HelD family protein -
  OHA17_RS36120 (OHA17_36055) vraR 7908673..7909383 (-) 711 WP_406510001.1 response regulator Regulator
  OHA17_RS36125 (OHA17_36060) - 7909380..7910591 (-) 1212 WP_406510002.1 sensor histidine kinase -
  OHA17_RS36130 (OHA17_36065) - 7910741..7912315 (+) 1575 WP_406510003.1 nitrilase-related carbon-nitrogen hydrolase -
  OHA17_RS36135 (OHA17_36070) - 7912379..7913596 (-) 1218 WP_406510004.1 nitrate/nitrite transporter -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25144.19 Da        Isoelectric Point: 7.3640

>NTDB_id=654058 OHA17_RS36120 WP_406510001.1 7908673..7909383(-) (vraR) [Streptomyces sp. NBC_00212]
MTIRVLLVDDQEMVRTGLRLVIDRREDLSIVGEAADGEQAVARAVEVRPDVVLMDVRMPGTTGVEATRRITTCWPGPGPA
PRVLVLTTFDLDEYVHAALRAGAVGFLLKNSPPDQLAQAIRSTAHGEAVLAPSVTRRLIDTVTALPAALLPHAPAPAPRE
GELAALLTERELQVLVLVARGLSNARIASALGLSEGNVKSRVNRILTRLGLENRVQAALLAHQEGLAAVVRMPPGT

Nucleotide


Download         Length: 711 bp        

>NTDB_id=654058 OHA17_RS36120 WP_406510001.1 7908673..7909383(-) (vraR) [Streptomyces sp. NBC_00212]
ATGACCATCCGAGTACTGCTCGTCGACGACCAGGAGATGGTCCGGACCGGTCTCCGCCTGGTCATCGACCGCCGTGAAGA
CCTGTCGATCGTCGGCGAGGCGGCCGACGGGGAGCAGGCCGTCGCGCGCGCCGTCGAGGTCCGGCCCGACGTCGTGCTGA
TGGACGTCCGCATGCCCGGCACGACGGGCGTCGAGGCCACGCGGCGCATCACCACGTGCTGGCCCGGGCCGGGTCCGGCT
CCGCGGGTCCTCGTGCTCACCACGTTCGACCTCGACGAGTACGTGCATGCCGCGCTGCGCGCCGGGGCCGTCGGCTTCCT
GCTGAAGAACAGCCCTCCCGACCAGCTCGCCCAGGCCATTCGCTCAACAGCCCACGGAGAGGCCGTGCTTGCTCCGAGTG
TCACGCGCCGCCTCATCGACACCGTCACCGCCCTGCCGGCCGCCCTCCTGCCGCATGCCCCGGCTCCCGCTCCGCGCGAG
GGCGAGCTCGCGGCCCTGTTGACCGAGCGCGAACTCCAGGTCCTGGTGCTGGTGGCCCGGGGGCTGTCCAACGCCCGGAT
CGCCTCGGCCCTCGGCCTCAGCGAGGGGAACGTGAAGAGCCGCGTCAATCGCATCCTGACCCGGCTCGGCCTGGAGAACC
GGGTCCAGGCCGCCCTGCTCGCCCACCAGGAAGGCCTTGCCGCGGTCGTCCGCATGCCGCCGGGGACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(166-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.496

95.763

0.369