Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHA17_RS27310 Genome accession   NZ_CP108115
Coordinates   5987345..5989078 (-) Length   577 a.a.
NCBI ID   WP_406508766.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5982345..5994078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS27300 (OHA17_27240) - 5984047..5985309 (+) 1263 WP_406508764.1 RNA polymerase sigma factor -
  OHA17_RS27305 (OHA17_27245) rcrQ 5985420..5987348 (-) 1929 WP_406508765.1 ABC transporter ATP-binding protein Regulator
  OHA17_RS27310 (OHA17_27250) rcrP 5987345..5989078 (-) 1734 WP_406508766.1 ABC transporter ATP-binding protein Regulator
  OHA17_RS27315 (OHA17_27255) - 5989207..5990652 (-) 1446 WP_406508767.1 FGGY family carbohydrate kinase -
  OHA17_RS27320 (OHA17_27260) - 5990773..5991072 (-) 300 WP_398872459.1 YtxH domain-containing protein -
  OHA17_RS27340 (OHA17_27280) - 5991848..5992909 (-) 1062 WP_406508768.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62497.52 Da        Isoelectric Point: 6.4256

>NTDB_id=654037 OHA17_RS27310 WP_406508766.1 5987345..5989078(-) (rcrP) [Streptomyces sp. NBC_00212]
MLIRLLRSHLGPYKKPIALLVLLQLLQTSATLYLPTLNANIIDNGVVNGDTGYILGHGGIMIAVSLVQVFCNIGAVFYGA
RTAAALGRDVRAAVFARVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDEYEQGRFRGANTELTDVSLATGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGDMQIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDTSVVP
PKSPVLELRRHGHLEVRGADFKYPGAEASVLRGVELTARPGETTAIIGSTGSGKSTLLSLVPRLIDTTDGQVLVDGEDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVSQLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALGRETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=654037 OHA17_RS27310 WP_406508766.1 5987345..5989078(-) (rcrP) [Streptomyces sp. NBC_00212]
GTGCTCATACGACTCCTGCGGTCCCATCTAGGGCCGTACAAGAAACCGATAGCCCTGCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCCACCCTTTATCTGCCCACCCTCAACGCGAACATCATTGACAACGGTGTCGTGAACGGGGACACGGGTTACA
TCCTGGGACACGGCGGCATCATGATCGCCGTCAGCCTCGTCCAGGTGTTCTGCAACATCGGTGCCGTCTTCTACGGTGCC
CGGACCGCGGCGGCCCTCGGACGCGACGTCCGGGCCGCCGTCTTCGCGCGGGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
GCACTTCGGGGCGCCGTCCCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTCATGGCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCCGCGGTC
CTCCTCGCCGTCGTTCCCGTCCTCGGCATCGCGGTCTCGCTGATCGTGCGCAGGATGCGGCCGCTGTTCCGCACCATGCA
GACCCGCCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTACGCGACG
AGTACGAGCAGGGCCGCTTCCGGGGCGCCAACACCGAGCTCACCGACGTCTCCCTGGCCACCGGCCGCCTCATGGCGCTG
ATGTTCCCGACCGTCATGACCGTCGTGAACGTCTCGTCGGTGGCCGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGACATGCAGATCGGCCAGCTCACCGCGTTCCTCGCGTACCTCATGCAGATCGTGATGGCCGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGGGACCGACACCAGCGTGGTGCCG
CCCAAGAGCCCGGTGCTCGAACTGCGCCGGCACGGCCATCTCGAAGTGCGGGGCGCCGACTTCAAGTACCCGGGCGCGGA
GGCCTCCGTACTGCGGGGCGTCGAGCTGACGGCCCGGCCCGGCGAGACCACCGCGATCATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTCAGCCTGGTGCCCCGGCTGATCGACACCACCGACGGCCAGGTGCTCGTCGACGGCGAGGACGTCCGC
ACGCTCGACCCGGTCCTGCTCGCCAAGACCGTGTCGCTGGTGCCGCAGAAGCCGTATCTGTTCTCGGGGACCGTGGCCAC
CAACCTGCGCTACGGCAACCCCGACGCGAGCGACGAGGAGCTCTGGCACGCGCTCGAAGTGGCGCAGGCCAAGGAGTTCG
TCTCCCAGCTGGAGGGCGGCCTGGACGCACCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGTCAGCGCCAACGGCTC
GCCATCGCGCGCACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCTCCGCGCTCGGCCGCGAGACCGCCGAGGCCACGGTCGTGATCGTCGCCCAGCGGGTCTCCACCATCC
GGGACGCCGACCGGATCATCGTCCTCGACGAGGGACGGGTCGTCGGGACCGGCCGCCATCACGAGCTGATGGCCGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCTGAGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.068

94.107

0.386