Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHA17_RS27305 Genome accession   NZ_CP108115
Coordinates   5985420..5987348 (-) Length   642 a.a.
NCBI ID   WP_406508765.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5980420..5992348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS27290 (OHA17_27230) - 5980629..5981891 (+) 1263 WP_406508763.1 NAD(P)/FAD-dependent oxidoreductase -
  OHA17_RS27295 (OHA17_27235) dnaG 5981921..5983813 (+) 1893 WP_053727573.1 DNA primase -
  OHA17_RS27300 (OHA17_27240) - 5984047..5985309 (+) 1263 WP_406508764.1 RNA polymerase sigma factor -
  OHA17_RS27305 (OHA17_27245) rcrQ 5985420..5987348 (-) 1929 WP_406508765.1 ABC transporter ATP-binding protein Regulator
  OHA17_RS27310 (OHA17_27250) rcrP 5987345..5989078 (-) 1734 WP_406508766.1 ABC transporter ATP-binding protein Regulator
  OHA17_RS27315 (OHA17_27255) - 5989207..5990652 (-) 1446 WP_406508767.1 FGGY family carbohydrate kinase -
  OHA17_RS27320 (OHA17_27260) - 5990773..5991072 (-) 300 WP_398872459.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 68936.50 Da        Isoelectric Point: 5.5785

>NTDB_id=654036 OHA17_RS27305 WP_406508765.1 5985420..5987348(-) (rcrQ) [Streptomyces sp. NBC_00212]
MSGPGGRMMMGGGPDQRSMNFKESGKRLVKRLAPEKAILSVMLLAVVVSVGLSVVGPKILGKATDLVFAGVIGPRFPDGM
SKAQALEALRHKGQGGLADMLSGVDFTPGGSIDFGAVGTVLLTALAVYVGAGLMMLVATRLANRAINKTVFRLREDIQTK
LSRLPLSYFDKAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVATKVGK
RSQPQFVQQWKSTGKLNAHIEEMYTGHALVKVFGRQQESANAFAEQNDALYEASFKAQFNSGVMQPVMMFVSNLNYVLVA
VVGGLRVATGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDTASPERPEVLRGAVALE
NVSFRYEPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDAARMTREELRSGIGMVLQDT
WLFGGSIADNIAYGAAKDVTREEIEEAAKAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=654036 OHA17_RS27305 WP_406508765.1 5985420..5987348(-) (rcrQ) [Streptomyces sp. NBC_00212]
ATGAGCGGGCCCGGTGGACGCATGATGATGGGCGGCGGCCCGGATCAGCGGTCGATGAACTTCAAGGAATCCGGAAAACG
GCTGGTCAAACGGCTGGCGCCGGAGAAGGCCATCCTGAGCGTGATGCTGCTCGCGGTCGTGGTCAGCGTCGGCCTCTCGG
TGGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGTGTGATCGGTCCGCGGTTCCCGGACGGCATG
AGCAAGGCGCAGGCCCTGGAGGCCCTGCGGCACAAGGGCCAGGGCGGCCTGGCGGACATGCTCTCGGGCGTGGACTTCAC
CCCGGGCGGCAGCATCGACTTCGGCGCGGTCGGCACCGTCCTGCTCACCGCCCTCGCGGTGTACGTGGGCGCCGGGCTCA
TGATGCTGGTGGCGACCCGGCTCGCCAACCGGGCCATCAACAAGACCGTGTTCCGGCTGCGCGAGGACATCCAGACGAAG
CTGTCGCGGCTTCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGTGAGGTGCTCAGCCGCGCGACCAACGACATCGACAA
CATCTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTCACCATCGTCGGCGTGCTGGTCATGATGT
TCTGGATCTCGCCGCTGCTCGCGCTGGTGGCGCTGGTCACGGTGCCTTTGTCGGTGGTCGTGGCCACCAAGGTCGGCAAG
CGGTCGCAGCCCCAGTTCGTCCAGCAGTGGAAGTCGACCGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGCCGCCAGCAGGAGTCGGCGAACGCCTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCT
CGTTCAAGGCGCAGTTCAACAGCGGCGTCATGCAGCCGGTGATGATGTTCGTGTCGAACCTGAACTACGTCCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTCGCGACCGGCTCGCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACCCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCCGCCGAGCGGATCTTCGAGC
TGCTCGACGCCGAGGAGCAGGCCCCCGACACGGCGTCGCCGGAGCGCCCGGAGGTGCTGCGCGGCGCGGTCGCCCTGGAG
AACGTGTCCTTCCGGTACGAGCCGGAGAAGCCGCTCATCGAGGACCTCTCACTGACGGTCGAGCCCGGGCACACGGTCGC
GATCGTCGGCCCGACGGGCGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGAGGTCACCGGCGGCCGGA
TCACCCTGGACGGGGTCGACGCGGCCAGGATGACCCGCGAGGAACTGCGCTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCCGACAACATCGCGTACGGCGCGGCGAAGGACGTGACCCGCGAGGAGATCGAGGAGGC
GGCGAAGGCCGCGCACGCGGACCGCTTCATCCGTACGCTCCCCGAGGGCTACGACACCGTCATCGACGACGAGGGCACCG
GGGTCAGCGCGGGCGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGAGTTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCCCACGGGCGCACGTCGTT
CGTCATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGG
GCACGCACGACGAGCTGTTGGCGGCGGAGGGCGCGTACGCGCGGCTGTACGCGGCCCAGTTCGCCCAGGCGGTGGCGGAG
GTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.748

96.262

0.402