Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OHA17_RS16735 Genome accession   NZ_CP108115
Coordinates   3683575..3685431 (+) Length   618 a.a.
NCBI ID   WP_406507302.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3678575..3690431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS16720 (OHA17_16655) - 3679161..3680360 (-) 1200 WP_406507300.1 FAD-dependent oxidoreductase -
  OHA17_RS16725 (OHA17_16660) - 3680441..3681676 (-) 1236 WP_406510738.1 ATP-grasp domain-containing protein -
  OHA17_RS16730 (OHA17_16665) fahA 3681899..3683125 (+) 1227 WP_406507301.1 fumarylacetoacetase -
  OHA17_RS16735 (OHA17_16670) recQ 3683575..3685431 (+) 1857 WP_406507302.1 DNA helicase RecQ Machinery gene
  OHA17_RS16740 (OHA17_16675) nuoN 3685887..3687539 (-) 1653 WP_053728777.1 NADH-quinone oxidoreductase subunit NuoN -
  OHA17_RS16745 (OHA17_16680) - 3687536..3689107 (-) 1572 WP_406507303.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 67091.41 Da        Isoelectric Point: 5.8383

>NTDB_id=654009 OHA17_RS16735 WP_406507302.1 3683575..3685431(+) (recQ) [Streptomyces sp. NBC_00212]
MNGTGGTQMMDAETEALQTLHRVFGYEAFRGAQGEVIEHVVAGGDAVVLMPTGGGKSLCYQIPALVRPGTGVVVSPLIAL
MQDQVDALRALGVRAGFINSTQDFDERRTVEAELLAGELDLLYLAPERLRVEATLDLLSRAKISVFAIDEAHCVAQWGHD
FRPDYLALSLLGERWPDVPRIALTATATDATHREITQRLGMPQARHFVASFDRPNIQYRIVPKSDPKKQLLTFLKEEHEG
DAGIVYCLSRASVEKTAQYLSDNGVQAVPYHAGLDSGTRAVNQSRFLREDGLVVVATIAFGMGIDKPDVRFVAHLDLPKS
VEGYYQETGRAGRDGLASTAWMAYGLQDVVQQRKLIQGGEGDEAFRRRAAAHLDAMLALCETASCRRAQLLGYFGQEATA
ENCGNCDTCLTPPKTWDGTVAAQKVLSTVVRLQRERGQKFGAGQIIDILLGRRTAKIIQFDHDALSVFGIGEDLSEPQWR
GVVRQLLAQGLLAVEGEYGTLVLTEPSGEVLGGRREVRMRTEPEKPARAPRSSSKKPAAAVDLPPEAVPVFEALRAWRGA
QAKEAGVPAYVIFHDATLREIATARPGSMDELGTIGGVGEKKLATWGEGVLSVLTTLD

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=654009 OHA17_RS16735 WP_406507302.1 3683575..3685431(+) (recQ) [Streptomyces sp. NBC_00212]
ATGAACGGGACGGGCGGGACGCAGATGATGGACGCGGAGACCGAGGCCCTGCAGACACTGCACCGCGTCTTCGGATACGA
GGCCTTCCGCGGAGCACAGGGCGAGGTCATCGAGCACGTCGTGGCGGGCGGAGACGCCGTCGTCCTCATGCCCACCGGCG
GCGGAAAATCGCTCTGCTACCAGATCCCCGCCCTGGTCAGGCCCGGCACGGGCGTCGTGGTCTCCCCCCTCATCGCGCTC
ATGCAGGACCAGGTGGACGCGCTGCGCGCGCTCGGCGTGCGCGCCGGGTTCATCAACTCCACGCAGGACTTCGACGAGCG
CCGCACCGTCGAGGCCGAGCTGCTGGCCGGCGAGCTCGACCTGCTGTATCTGGCACCCGAGCGGCTCCGCGTGGAGGCCA
CCCTCGACCTCCTCTCCCGCGCCAAGATCTCCGTATTCGCGATCGACGAGGCGCACTGCGTCGCCCAGTGGGGCCACGAC
TTCCGCCCGGACTACCTCGCCCTGTCCCTGCTCGGCGAGCGCTGGCCGGACGTGCCGCGCATCGCACTGACCGCGACCGC
CACGGACGCCACCCACCGCGAGATCACCCAGCGCCTCGGCATGCCGCAGGCCCGGCACTTCGTGGCGAGCTTCGACCGGC
CGAACATCCAGTACCGGATCGTGCCGAAGAGCGACCCGAAGAAGCAGCTCCTCACCTTCCTCAAGGAGGAGCACGAGGGG
GACGCGGGCATCGTCTACTGCCTCTCGCGGGCCTCCGTGGAGAAGACCGCGCAGTACCTGAGCGACAACGGGGTGCAGGC
CGTCCCGTACCACGCGGGCCTCGACTCCGGGACGCGCGCCGTCAACCAGTCCCGCTTCCTGCGGGAGGACGGCCTGGTCG
TGGTGGCGACCATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTACGCTTCGTCGCCCACCTCGACCTGCCCAAGTCG
GTCGAGGGCTACTACCAGGAGACGGGTCGCGCCGGGCGTGACGGTCTCGCGTCGACGGCCTGGATGGCGTACGGGCTCCA
AGACGTCGTCCAGCAGCGGAAGTTGATCCAGGGCGGCGAGGGCGACGAGGCGTTCCGGCGCCGGGCGGCCGCCCACCTGG
ACGCGATGCTGGCGCTGTGCGAGACCGCCTCGTGCCGCCGGGCCCAGCTCCTCGGCTACTTCGGCCAGGAGGCCACGGCC
GAGAACTGCGGCAACTGCGACACCTGCCTGACCCCGCCGAAGACGTGGGACGGCACGGTGGCGGCGCAGAAGGTGCTCTC
CACCGTCGTACGCCTCCAGCGCGAGCGGGGCCAGAAGTTCGGCGCGGGCCAGATCATCGACATCCTGCTCGGCCGCAGGA
CCGCGAAGATCATCCAGTTCGACCATGACGCACTGTCCGTCTTCGGCATCGGGGAAGACTTGTCCGAGCCCCAATGGCGG
GGCGTGGTGCGGCAGTTGCTCGCGCAGGGGCTGCTCGCGGTGGAGGGGGAGTACGGGACGCTGGTCCTGACCGAGCCGAG
CGGGGAGGTCCTTGGCGGCCGGCGCGAGGTCCGGATGCGGACAGAGCCGGAGAAGCCGGCGCGGGCGCCGCGGAGCTCTT
CGAAGAAGCCGGCGGCGGCCGTCGATCTGCCGCCCGAGGCGGTTCCGGTCTTCGAGGCGTTGCGGGCCTGGCGCGGGGCC
CAGGCGAAGGAGGCCGGGGTCCCGGCATACGTGATCTTCCACGATGCGACGTTGCGGGAGATCGCGACGGCTCGGCCCGG
GTCGATGGATGAGCTGGGCACGATTGGCGGGGTGGGCGAGAAGAAACTGGCAACGTGGGGCGAGGGAGTCCTGTCCGTCC
TGACAACCCTGGACTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(32-189)

RecQ zinc-binding (RecQ_Zn_bind)

(347-410)

RQC domain (RQC)

(412-526)

HRDC domain (HRDC)

(550-613)

Helicase conserved C-terminal domain (Helicase_C)

(228-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.579

95.631

0.369