Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS10555 Genome accession   NZ_CP108115
Coordinates   2327292..2327981 (-) Length   229 a.a.
NCBI ID   WP_406506115.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2322292..2332981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS10530 (OHA17_10455) - 2322449..2323309 (-) 861 WP_406506106.1 ABC transporter permease -
  OHA17_RS10535 (OHA17_10460) - 2323299..2324114 (-) 816 WP_406506108.1 ABC transporter ATP-binding protein -
  OHA17_RS10540 (OHA17_10465) - 2324260..2324943 (+) 684 WP_406506109.1 response regulator -
  OHA17_RS10545 (OHA17_10470) - 2325012..2326610 (-) 1599 WP_406506111.1 cation acetate symporter -
  OHA17_RS10550 (OHA17_10475) - 2326607..2327164 (-) 558 WP_406506113.1 DUF485 domain-containing protein -
  OHA17_RS10555 (OHA17_10480) vraR 2327292..2327981 (-) 690 WP_406506115.1 response regulator Regulator
  OHA17_RS10560 (OHA17_10485) - 2327978..2329174 (-) 1197 WP_406506117.1 sensor histidine kinase -
  OHA17_RS10565 (OHA17_10490) - 2329171..2329689 (-) 519 WP_406506119.1 DUF1453 domain-containing protein -
  OHA17_RS10570 (OHA17_10495) - 2329892..2332009 (-) 2118 WP_406506121.1 type IIA DNA topoisomerase subunit B -
  OHA17_RS10575 (OHA17_10500) - 2332444..2332674 (+) 231 WP_120720925.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24105.63 Da        Isoelectric Point: 5.3623

>NTDB_id=653984 OHA17_RS10555 WP_406506115.1 2327292..2327981(-) (vraR) [Streptomyces sp. NBC_00212]
MTGSGRGARGTIRVVVADDQSVVREGIVMLLGLLPGIEVVGSARDGEEAVALTAELAPDIVLMDLRMPRCDGVEATRRIR
AGHPGTEVVILTTYADDDSLFPALQAGARGYLTKDAGGEEIVKSIEDVLAGQAGLAPAVQRRLLERVTAPPPVPSASAEL
PDGLTVREGEVLGLVAEGMSNLEISRALHISTATVKTHINNIFGKTGVRDRAQAMRYAYLHGLAQLPRG

Nucleotide


Download         Length: 690 bp        

>NTDB_id=653984 OHA17_RS10555 WP_406506115.1 2327292..2327981(-) (vraR) [Streptomyces sp. NBC_00212]
ATGACCGGGAGCGGGCGCGGGGCACGGGGGACGATCAGGGTGGTCGTGGCCGACGACCAGTCCGTGGTGCGCGAGGGAAT
CGTGATGCTGCTCGGGCTGCTGCCCGGCATCGAGGTCGTCGGATCGGCACGGGACGGCGAGGAGGCGGTCGCCCTCACGG
CCGAACTGGCTCCGGACATCGTCCTGATGGACCTGCGCATGCCGCGCTGCGACGGGGTCGAGGCGACCCGCCGCATCCGG
GCCGGGCATCCCGGCACCGAGGTGGTGATCCTGACGACGTACGCGGACGACGACTCGCTCTTCCCGGCCCTGCAAGCCGG
AGCGCGGGGCTATCTCACCAAGGACGCCGGGGGCGAGGAGATCGTCAAGTCGATAGAGGACGTGCTGGCCGGGCAGGCCG
GGCTCGCCCCCGCCGTACAGCGCCGGCTCCTGGAACGGGTGACCGCGCCTCCGCCCGTCCCTTCCGCGTCGGCCGAGCTG
CCCGACGGGCTCACCGTGCGCGAGGGCGAGGTGCTGGGGCTGGTTGCCGAAGGGATGTCCAACCTCGAGATCTCGCGGGC
CCTGCACATCTCGACAGCCACCGTGAAGACGCACATCAACAACATCTTCGGCAAGACCGGGGTGCGCGACCGGGCGCAGG
CCATGCGGTACGCCTACCTGCACGGCCTCGCTCAGCTACCGCGCGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-218)

Response regulator receiver domain (Response_reg)

(14-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.93

93.886

0.384