Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA17_RS08665 Genome accession   NZ_CP108115
Coordinates   1882673..1883314 (+) Length   213 a.a.
NCBI ID   WP_053725775.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00212     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877673..1888314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA17_RS08645 (OHA17_08585) - 1878743..1879546 (+) 804 WP_406505524.1 IclR family transcriptional regulator -
  OHA17_RS08650 (OHA17_08590) - 1879623..1880318 (-) 696 WP_406505526.1 ABC transporter ATP-binding protein -
  OHA17_RS08655 (OHA17_08595) - 1880315..1881358 (-) 1044 WP_398877214.1 ABC transporter permease -
  OHA17_RS08660 (OHA17_08600) - 1881492..1882676 (+) 1185 WP_406505528.1 sensor histidine kinase -
  OHA17_RS08665 (OHA17_08605) vraR 1882673..1883314 (+) 642 WP_053725775.1 response regulator transcription factor Regulator
  OHA17_RS08670 (OHA17_08610) - 1883423..1883749 (+) 327 WP_053725847.1 hypothetical protein -
  OHA17_RS08675 (OHA17_08615) - 1883759..1884568 (+) 810 WP_406505531.1 papain-like cysteine protease family protein -
  OHA17_RS08680 (OHA17_08620) - 1884577..1885137 (+) 561 WP_406505533.1 hypothetical protein -
  OHA17_RS08685 (OHA17_08625) - 1885201..1885692 (-) 492 WP_406505535.1 universal stress protein -
  OHA17_RS08690 (OHA17_08630) - 1885689..1885817 (-) 129 WP_406505537.1 hypothetical protein -
  OHA17_RS08695 (OHA17_08635) - 1885918..1887405 (+) 1488 WP_406505539.1 PLP-dependent aminotransferase family protein -
  OHA17_RS08700 (OHA17_08640) - 1887476..1887793 (-) 318 WP_078966346.1 DUF5955 family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22222.46 Da        Isoelectric Point: 6.3405

>NTDB_id=653979 OHA17_RS08665 WP_053725775.1 1882673..1883314(+) (vraR) [Streptomyces sp. NBC_00212]
MTAAPIRLLLADDHPIVRAGLRAVLDTEPDFAVTGEAATAERAVELASSGAYDVVLMDLQFGAGMHGAEATAKIAARPGA
PRVLVLTTYDTDADILAAVEAGAAGYLLKDAPPEELAAAVRTAASGQSALAPAVAHRLMDRMRTPAEALTRRELEVLQLV
GDGLSNQQISKQLFLSQATVKSHLVHIYAKLGVDSRTAAVAAASARRLIRQPG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=653979 OHA17_RS08665 WP_053725775.1 1882673..1883314(+) (vraR) [Streptomyces sp. NBC_00212]
GTGACCGCGGCGCCCATCCGGCTGCTGCTCGCCGACGACCACCCCATCGTGCGGGCCGGGCTGCGCGCGGTCCTCGACAC
CGAGCCCGATTTCGCGGTGACCGGGGAGGCAGCCACCGCCGAGCGCGCGGTGGAGCTCGCCTCGTCCGGCGCGTACGACG
TCGTCCTGATGGACCTCCAGTTCGGGGCCGGGATGCACGGCGCCGAGGCGACCGCGAAGATCGCGGCGCGGCCGGGCGCC
CCGCGTGTCCTCGTGCTCACGACGTACGACACGGACGCGGACATCCTCGCGGCGGTGGAGGCGGGCGCGGCGGGCTATCT
GCTCAAGGACGCCCCGCCCGAGGAGCTGGCGGCGGCGGTGCGCACGGCGGCCTCGGGCCAGTCCGCGCTCGCCCCGGCCG
TGGCGCACCGCCTGATGGACCGGATGCGCACGCCCGCCGAAGCGCTGACCCGGCGCGAGCTGGAGGTGTTGCAACTGGTC
GGCGACGGGCTCTCCAACCAGCAGATCAGCAAGCAGCTGTTCCTCAGCCAGGCCACCGTCAAGTCCCATCTCGTCCATAT
CTACGCCAAGTTGGGAGTGGACTCGCGCACGGCGGCGGTCGCGGCCGCGAGCGCGCGCCGCCTGATCCGCCAGCCGGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(9-120)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.5

97.653

0.366