Detailed information NTG0653975

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: L9O85_RS07420
• Genome accession: NZ_CP091870
• Coordinates: 1557544..1558914 (-)
• Length: 456 a.a.
• NCBI ID: WP_108981213.1
• Uniprot ID: -
• Organism: Lawsonibacter asaccharolyticus strain OA10
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1552544..1563914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L9O85_RS07395 (L9O85_07360)	fba	1553584..1554549 (+)	966	WP_050624815.1	class II fructose-1,6-bisphosphate aldolase	-
L9O85_RS07400 (L9O85_07365)	-	1554722..1555225 (+)	504	WP_108981214.1	amidase domain-containing protein	-
L9O85_RS07405 (L9O85_07370)	-	1555265..1555630 (-)	366	WP_301580073.1	SdpI family protein	-
L9O85_RS07410 (L9O85_07375)	-	1555634..1556032 (-)	399	WP_050624818.1	MmcQ/YjbR family DNA-binding protein	-
L9O85_RS07415 (L9O85_07380)	-	1556029..1557051 (-)	1023	WP_301580076.1	tyrosine recombinase XerC	-
L9O85_RS07420 (L9O85_07385)	radA	1557544..1558914 (-)	1371	WP_108981213.1	DNA repair protein RadA	Machinery gene
L9O85_RS07425 (L9O85_07390)	-	1558924..1559646 (-)	723	WP_050624821.1	N-acetylmuramoyl-L-alanine amidase	-
L9O85_RS07430 (L9O85_07395)	spoIVA	1559842..1561320 (-)	1479	WP_050624822.1	stage IV sporulation protein A	-
L9O85_RS07435 (L9O85_07400)	-	1561479..1562999 (-)	1521	WP_256181491.1	SPOCS domain-containing protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 48636.28 Da
• Isoelectric Point: 6.6245

>NTDB_id=653975 L9O85_RS07420 WP_108981213.1 1557544..1558914(-) (radA) [Lawsonibacter asaccharolyticus strain OA10]
MKAKTVFYCTECGNETPKWQGRCPACGAWNTVVERPAEQAPRKGGPARGTSGIGVPLSRPKSMEEVEVTDELRFRTGMGE
LDRVLGGGAVRGSLVLVGGAPGIGKSTLMLQICDNLCRFAKVLYVSGEESERQIKLRAQRLNVAGEGLYLLSETNLEHVL
DAVHSLQPDVLIVDSIQTLYHGDISSGPGSISQVKECTMSLMQLAKGEGITVFVIGHVNKEGSIAGPKVLEHMVDCVLYF
EGERQMAYRILRAAKNRFGATNEIGVFEMADAGLTEVPNPSEALLAGRPTDAPGTCVTCVMEGVRPVLAEVQALVVPSSL
GNPRRVSNGVDYNRAMLLLAVLEKRGGLMLSGCDAYVNVIGGLSLEEPAADLAAMIAFASSFRDRPVPSDLAAIGEIGLT
GELRAVSALGQRLSEVRRLGFTKCLIPKRVQGKLSVPEGLDVIRVANIREALAAIL

Nucleotide

• Length: 1371 bp

>NTDB_id=653975 L9O85_RS07420 WP_108981213.1 1557544..1558914(-) (radA) [Lawsonibacter asaccharolyticus strain OA10]
ATGAAGGCCAAGACGGTATTTTATTGTACGGAATGTGGAAATGAGACGCCCAAGTGGCAGGGGAGATGCCCGGCCTGCGG
GGCCTGGAATACGGTGGTGGAGCGGCCCGCAGAACAGGCCCCCAGGAAGGGAGGGCCCGCCCGGGGGACATCCGGTATCG
GCGTCCCTCTCAGCCGTCCTAAGTCCATGGAAGAGGTGGAGGTCACCGATGAGCTGCGCTTCCGCACCGGGATGGGAGAG
CTGGACCGGGTGCTGGGCGGCGGAGCGGTGCGCGGTTCATTGGTGCTGGTGGGCGGCGCACCGGGCATTGGAAAATCCAC
CCTGATGCTCCAGATCTGCGACAACCTGTGCCGGTTCGCCAAGGTCCTGTATGTATCCGGTGAGGAGTCAGAGCGGCAGA
TCAAGCTACGGGCCCAGCGGCTGAACGTGGCCGGCGAGGGGCTCTATCTCCTGTCGGAAACGAACCTGGAACACGTGCTG
GACGCAGTCCACAGCCTCCAGCCCGATGTGCTCATCGTGGACTCCATTCAGACCCTCTATCACGGGGATATCAGCTCGGG
GCCGGGAAGCATCTCCCAGGTGAAGGAGTGTACCATGTCCCTGATGCAGCTGGCGAAAGGGGAGGGGATCACCGTCTTTG
TCATCGGCCACGTGAACAAGGAGGGATCTATCGCCGGCCCTAAGGTGCTGGAGCATATGGTGGACTGCGTTCTCTATTTT
GAGGGAGAGCGGCAGATGGCCTACCGCATCCTCCGGGCGGCGAAAAATCGCTTTGGCGCCACCAATGAGATCGGCGTCTT
TGAGATGGCAGACGCGGGACTGACGGAAGTGCCCAACCCGTCGGAGGCCCTGCTGGCCGGGCGGCCCACCGACGCCCCCG
GGACCTGCGTCACCTGCGTGATGGAGGGGGTGCGGCCAGTGCTGGCGGAGGTACAGGCGCTGGTGGTGCCCTCCAGCCTG
GGCAATCCCCGCCGGGTGAGCAACGGGGTGGACTACAACCGGGCCATGCTGCTGCTGGCGGTGCTGGAAAAGCGCGGCGG
ACTGATGCTCAGCGGCTGCGATGCCTATGTGAACGTGATTGGCGGCCTCTCACTGGAGGAGCCCGCCGCTGATCTGGCCG
CTATGATCGCTTTTGCCTCCAGCTTCCGGGACAGGCCTGTTCCCAGCGACTTGGCCGCCATCGGAGAGATCGGCCTGACC
GGCGAGCTGCGGGCGGTGAGTGCCCTGGGACAGCGGCTCAGTGAGGTGCGGCGCCTGGGATTTACCAAATGCCTGATCCC
GAAACGGGTCCAAGGAAAGCTGTCTGTTCCGGAGGGCCTGGACGTGATCCGGGTGGCCAACATCCGGGAAGCACTGGCCG
CCATTTTGTAA

Domains

Predicted by InterproScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (366-453)

• AAA domain (AAA_25) (74-222)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (7-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.982	99.123	0.535
radA	Streptococcus pneumoniae Rx1	50.989	99.781	0.509
radA	Streptococcus pneumoniae D39	50.989	99.781	0.509
radA	Streptococcus pneumoniae R6	50.989	99.781	0.509
radA	Streptococcus pneumoniae TIGR4	50.989	99.781	0.509
radA	Streptococcus mitis NCTC 12261	50.549	99.781	0.504
radA	Streptococcus mitis SK321	50.549	99.781	0.504