Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   OHA30_RS33080 Genome accession   NZ_CP108109
Coordinates   7789809..7790159 (+) Length   116 a.a.
NCBI ID   WP_328918094.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7784809..7795159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS33070 (OHA30_33135) - 7785082..7786242 (+) 1161 WP_328917543.1 exonuclease SbcCD subunit D -
  OHA30_RS33075 (OHA30_33140) - 7786242..7787210 (+) 969 Protein_6531 SMC family ATPase -
  OHA30_RS33080 (OHA30_33145) sbcC 7789809..7790159 (+) 351 WP_328918094.1 SbcC/MukB-like Walker B domain-containing protein Machinery gene
  OHA30_RS33085 (OHA30_33150) - 7790149..7790595 (-) 447 WP_328917544.1 Lrp/AsnC family transcriptional regulator -
  OHA30_RS33090 (OHA30_33155) - 7790690..7791181 (+) 492 WP_328917545.1 rhodanese-like domain-containing protein -
  OHA30_RS33095 (OHA30_33160) - 7791212..7791736 (-) 525 WP_328917546.1 GNAT family protein -
  OHA30_RS33100 (OHA30_33165) - 7791999..7792445 (+) 447 WP_328917547.1 MarR family transcriptional regulator -
  OHA30_RS33105 (OHA30_33170) - 7792510..7793880 (+) 1371 WP_328918095.1 MFS transporter -

Sequence

Protein


Download         Length: 116 a.a.        Molecular weight: 12440.85 Da        Isoelectric Point: 4.4540

>NTDB_id=653965 OHA30_RS33080 WP_328918094.1 7789809..7790159(+) (sbcC) [Streptomyces sp. NBC_00223]
MVVDAWTGTERDTSTLSGGETFFASLALALGLADVVTDESGGTRLDTLFIDEGFGSLDDQTLDEVLDVLDGLRERDRAVG
IVSHVADLRHRIPAQLRVVKGRDGSTVRQRTGAVRG

Nucleotide


Download         Length: 351 bp        

>NTDB_id=653965 OHA30_RS33080 WP_328918094.1 7789809..7790159(+) (sbcC) [Streptomyces sp. NBC_00223]
ATGGTCGTGGACGCCTGGACCGGCACCGAGCGCGACACCTCGACGCTGTCGGGCGGCGAGACGTTCTTCGCCTCGCTCGC
CCTCGCGCTCGGCCTGGCCGACGTGGTGACCGACGAGTCGGGCGGCACCCGCCTGGACACGCTCTTCATCGACGAGGGCT
TCGGCAGCCTGGACGACCAGACCCTCGACGAGGTGCTGGACGTCCTCGACGGGCTGAGGGAGCGGGACAGGGCCGTCGGC
ATCGTCAGCCACGTGGCCGATCTGCGGCACCGTATCCCCGCCCAACTGCGGGTCGTCAAAGGCCGGGACGGCTCCACGGT
CCGGCAGCGCACGGGCGCGGTCAGAGGATGA

Domains

Predicted by InterProScan.

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(6-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

47.368

81.897

0.388