Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA30_RS27575 Genome accession   NZ_CP108109
Coordinates   6456153..6456932 (-) Length   259 a.a.
NCBI ID   WP_328916576.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6451153..6461932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS27560 (OHA30_27575) - 6451512..6452732 (-) 1221 WP_328918016.1 serine/threonine-protein kinase -
  OHA30_RS27565 (OHA30_27580) - 6452722..6453987 (-) 1266 WP_328916574.1 FHA domain-containing protein -
  OHA30_RS27570 (OHA30_27585) - 6454091..6456079 (+) 1989 WP_328916575.1 ATP-dependent DNA helicase -
  OHA30_RS27575 (OHA30_27590) dinR/lexA 6456153..6456932 (-) 780 WP_328916576.1 transcriptional repressor LexA Regulator
  OHA30_RS27580 (OHA30_27595) nrdR 6457433..6457951 (+) 519 WP_328916577.1 transcriptional regulator NrdR -
  OHA30_RS27585 (OHA30_27600) - 6458068..6460956 (+) 2889 WP_328916578.1 vitamin B12-dependent ribonucleotide reductase -
  OHA30_RS27590 (OHA30_27605) - 6461129..6461899 (+) 771 WP_328916579.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27899.68 Da        Isoelectric Point: 7.4755

>NTDB_id=653956 OHA30_RS27575 WP_328916576.1 6456153..6456932(-) (dinR/lexA) [Streptomyces sp. NBC_00223]
MTTTAESAAAALAAHDRSPDRIGPLDVMNEDSAPKPARSLPGRPPGIRADSSGLTERQRRVIEVIRDSVQRRGYPPSMRE
IGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRASDAGHSQPTDTTGKPSASYVPLVGRIAAGGPILAEESVED
IFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRDNGHVWLLPHNAAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=653956 OHA30_RS27575 WP_328916576.1 6456153..6456932(-) (dinR/lexA) [Streptomyces sp. NBC_00223]
GTGACCACCACCGCAGAGAGCGCCGCAGCCGCATTGGCCGCACATGACCGCTCCCCGGATCGAATCGGCCCGTTGGACGT
GATGAACGAAGACAGCGCCCCGAAGCCCGCCCGCTCGCTTCCCGGCCGCCCGCCGGGCATTCGTGCCGACAGCTCGGGAC
TCACGGAAAGGCAGCGGCGCGTTATCGAGGTCATCAGGGACTCGGTGCAGCGTCGCGGATATCCGCCCTCCATGCGCGAG
ATCGGCCAGGCCGTGGGGCTGTCCAGCACCTCCTCGGTGGCCCATCAGTTGATGGCCCTGGAGCGCAAGGGCTTCCTGCG
CCGCGACCCGCACCGGCCGCGCGCGTACGAGGTCCGCGCCTCGGACGCCGGCCACTCGCAGCCCACCGACACCACCGGCA
AGCCCTCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCGGGCGGCCCGATCCTCGCCGAGGAGTCAGTCGAGGAC
ATCTTCCCGCTCCCCCGTCAGCTGGTCGGCGACGGCGAGCTGTTCGTGCTCAAGGTGGTCGGTGACTCGATGATCGAGGC
CGCCATCTGCGACGGCGACTGGGTGACCGTACGCCGTCAGCCCGTGGCGGAGAACGGCGACATCGTCGCGGCCATGCTGG
ACGGCGAGGCGACCGTCAAACGCTTCAAGCGGGACAACGGCCATGTGTGGCTGCTGCCGCACAACGCGGCCTACCAGCCC
ATCCCCGGTGACGAGGCGACCATCCTCGGCAAGGTGGTGGCCGTACTGCGCCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(52-115)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.283

81.853

0.371