Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA30_RS13715 Genome accession   NZ_CP108109
Coordinates   3279662..3280318 (+) Length   218 a.a.
NCBI ID   WP_328914115.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00223     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274662..3285318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA30_RS13700 (OHA30_13695) - 3276092..3277039 (-) 948 WP_328914113.1 sigma-70 family RNA polymerase sigma factor -
  OHA30_RS13705 (OHA30_13700) - 3277612..3278112 (+) 501 WP_328914114.1 hypothetical protein -
  OHA30_RS13710 (OHA30_13705) - 3278523..3279665 (+) 1143 WP_328917856.1 histidine kinase -
  OHA30_RS13715 (OHA30_13710) vraR 3279662..3280318 (+) 657 WP_328914115.1 response regulator transcription factor Regulator
  OHA30_RS13720 (OHA30_13715) - 3280428..3280913 (-) 486 WP_328914116.1 SPW repeat protein -
  OHA30_RS13725 (OHA30_13720) - 3281079..3281765 (-) 687 WP_328914117.1 TetR/AcrR family transcriptional regulator -
  OHA30_RS13730 (OHA30_13725) - 3281854..3283209 (-) 1356 WP_328914118.1 MFS transporter -
  OHA30_RS13735 (OHA30_13730) - 3283471..3284190 (+) 720 WP_328914119.1 MgtC/SapB family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23303.63 Da        Isoelectric Point: 5.6016

>NTDB_id=653924 OHA30_RS13715 WP_328914115.1 3279662..3280318(+) (vraR) [Streptomyces sp. NBC_00223]
MSAPERPLRVVVADDQATVREGLVLMLDLMPDIDVVGSAADGQQALDQVAEHRPDAILLDLHMPVMDGIEATRRLTADHP
EVAIVVLTTYADDRSVLDTLRAGARSYLTKDADRRHIAQTLRGAVAGLTVLDPQVQATLLAATLPAPAPAAAEPPDGLTR
REAEILTLIARGMTNAEIAAELFLSGNTVKTHINRIFAKTGSRDRAAATRYAGRHGLV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=653924 OHA30_RS13715 WP_328914115.1 3279662..3280318(+) (vraR) [Streptomyces sp. NBC_00223]
GTGAGCGCGCCGGAACGGCCGTTGCGGGTCGTGGTGGCCGACGACCAGGCGACCGTACGGGAGGGCCTGGTCCTCATGCT
CGACCTGATGCCGGACATCGACGTGGTCGGCTCGGCCGCGGACGGGCAGCAGGCGCTCGATCAGGTGGCCGAGCACCGCC
CGGACGCGATCCTGCTCGATCTGCACATGCCGGTGATGGACGGGATCGAGGCGACGCGGCGGCTCACCGCCGACCACCCC
GAGGTCGCGATCGTCGTCCTGACGACGTACGCGGACGACCGTTCGGTGCTGGACACGCTGCGGGCGGGGGCACGCAGCTA
CCTCACGAAGGACGCCGACCGCCGGCACATCGCGCAGACGCTGCGCGGGGCCGTCGCGGGGCTGACCGTGCTCGACCCGC
AGGTGCAGGCGACGCTGCTGGCCGCGACGCTCCCGGCGCCCGCGCCGGCGGCCGCCGAGCCGCCGGACGGGCTCACCCGG
CGCGAGGCGGAGATCCTCACGCTCATCGCGCGGGGGATGACGAACGCGGAGATCGCCGCGGAGCTCTTCCTCAGCGGCAA
CACGGTCAAGACGCACATCAACCGGATCTTCGCCAAGACCGGCTCGCGCGACCGCGCCGCCGCCACGCGCTACGCGGGTC
GGCACGGCCTGGTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-121)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.441

96.789

0.362