Detailed information NTG0653923

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OHA30_RS12665
• Genome accession: NZ_CP108109
• Coordinates: 3042758..3043753 (-)
• Length: 331 a.a.
• NCBI ID: WP_328913924.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00223
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3037758..3048753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHA30_RS12640 (OHA30_12635)	-	3038567..3038869 (+)	303	WP_328913920.1	hypothetical protein	-
OHA30_RS12645 (OHA30_12640)	-	3038994..3039197 (-)	204	WP_328913921.1	hypothetical protein	-
OHA30_RS12650 (OHA30_12645)	-	3039386..3040549 (+)	1164	WP_328913922.1	PLP-dependent cysteine synthase family protein	-
OHA30_RS12655 (OHA30_12650)	-	3040699..3041859 (+)	1161	WP_328917844.1	low temperature requirement protein A	-
OHA30_RS12660 (OHA30_12655)	-	3041886..3042653 (-)	768	WP_328913923.1	VIT family protein	-
OHA30_RS12665 (OHA30_12660)	rpoS	3042758..3043753 (-)	996	WP_328913924.1	sigma-70 family RNA polymerase sigma factor	Regulator
OHA30_RS12670 (OHA30_12665)	-	3043963..3044472 (+)	510	WP_328913925.1	N-acetyltransferase family protein	-
OHA30_RS12675 (OHA30_12670)	-	3044579..3045364 (+)	786	WP_328913926.1	class III extradiol ring-cleavage dioxygenase	-
OHA30_RS12680 (OHA30_12675)	-	3045384..3046022 (+)	639	WP_328913927.1	hypothetical protein	-
OHA30_RS12685 (OHA30_12680)	-	3046216..3047724 (-)	1509	WP_328913928.1	MFS transporter	-
OHA30_RS12690 (OHA30_12685)	-	3047998..3048654 (-)	657	WP_328913929.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 36469.11 Da
• Isoelectric Point: 5.0415

>NTDB_id=653923 OHA30_RS12665 WP_328913924.1 3042758..3043753(-) (rpoS) [Streptomyces sp. NBC_00223]
MATRAVARRNAGGTSSARAAGGEVADRDLVGMYLDEIARTPLLDAAREVELSRDIEAGVYAERILAADTGLPAGAGADAK
REELEAIVGAGERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITR
SIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDAEPAEIAAELDSTAGRIADVLDWARDPVSLNMSVDAEGETEFGD
LVEDGAAPSPEDSVLVMLRREELDGLIDRLDDRTASIIRARYGIVDGRERTLTEVGKEHGLTRERIRQIEKHALADLKRM
ARATGLDYEAA

Nucleotide

• Length: 996 bp

>NTDB_id=653923 OHA30_RS12665 WP_328913924.1 3042758..3043753(-) (rpoS) [Streptomyces sp. NBC_00223]
ATGGCAACCCGTGCCGTCGCCCGTCGTAACGCAGGCGGGACCAGCAGCGCTCGCGCCGCAGGCGGGGAAGTCGCCGACCG
CGACCTCGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCCGGGAGGTCGAGCTGTCCCGGG
ACATCGAAGCGGGCGTCTACGCAGAGCGCATACTCGCCGCTGACACCGGTCTGCCCGCCGGAGCGGGCGCCGACGCCAAG
CGCGAGGAGCTCGAAGCGATCGTCGGCGCAGGTGAGCGCGCCAAGGACATCTTCATCCGCTCCAACCTCCGCCTCGTCGT
CGCGGTCGCCCGCCGCTACCCGCGCAGCGGACTGCCGCTGCTCGACCTGATCCAGGAGGGGAACGCGGGCCTGGTCCGCG
CCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCGACCTGGTGGATCCGGCAGGCCATCACCCGT
TCCATCGCCGACCAGTCCCGTACGATCCGGCTGCCCGTGCACCTGGTCGAGGAGCTGGGCCGTATCCGGCGCGTGCAGCG
CGAGTTCAACCGCGAGCACGGCCGTGACGCGGAGCCCGCGGAGATCGCCGCGGAGCTGGACTCCACCGCGGGGCGCATCG
CCGACGTCCTGGACTGGGCCCGCGACCCGGTGTCCCTCAACATGTCGGTGGACGCCGAGGGCGAGACCGAGTTCGGCGAC
CTCGTCGAGGACGGCGCGGCTCCCTCCCCGGAGGACTCCGTGCTGGTCATGCTGCGCCGCGAAGAGCTGGACGGCCTGAT
CGACCGGCTCGACGACCGGACCGCCTCCATCATCCGCGCCCGGTACGGCATCGTGGACGGCCGTGAACGCACTCTCACCG
AGGTCGGCAAGGAACACGGCCTCACCCGCGAGCGCATCCGCCAGATCGAGAAGCACGCACTCGCCGATCTCAAGCGGATG
GCGCGCGCGACCGGACTGGACTACGAAGCCGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (267-318)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (28-61)

• Sigma-70 region 2 (Sigma70_r2) (98-167)

• Sigma-70 region 3 (Sigma70_r3) (177-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.604	91.541	0.363