Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CVPH_RS06010 | Genome accession | NZ_AP012977 |
| Coordinates | 949673..950629 (+) | Length | 318 a.a. |
| NCBI ID | WP_201340827.1 | Uniprot ID | A0A7U3V2K8 |
| Organism | Abyssogena phaseoliformis symbiont OG214 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 944673..955629
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVPH_RS05980 | - | 944707..945045 (-) | 339 | WP_201342439.1 | hypothetical protein | - |
| CVPH_RS05985 (CVPH_0935) | - | 945084..945419 (-) | 336 | WP_201340822.1 | gamma-glutamylcyclotransferase family protein | - |
| CVPH_RS05990 (CVPH_0936) | - | 945431..946720 (-) | 1290 | WP_201340823.1 | pitrilysin family protein | - |
| CVPH_RS05995 (CVPH_0937) | - | 946717..948042 (-) | 1326 | WP_201340824.1 | pitrilysin family protein | - |
| CVPH_RS06000 (CVPH_0938) | - | 948027..948602 (-) | 576 | WP_201340825.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| CVPH_RS06005 (CVPH_0939) | msrP | 948608..949564 (-) | 957 | WP_201340826.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| CVPH_RS06010 (CVPH_0940) | pilA | 949673..950629 (+) | 957 | WP_201340827.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| CVPH_RS06015 | - | 950815..951030 (+) | 216 | WP_201340828.1 | hypothetical protein | - |
| CVPH_RS06020 (CVPH_0942) | - | 951067..951720 (+) | 654 | WP_201340829.1 | TolC family protein | - |
| CVPH_RS06025 | - | 951717..951872 (+) | 156 | WP_201340830.1 | hypothetical protein | - |
| CVPH_RS06030 | - | 952014..952187 (+) | 174 | WP_201340831.1 | hypothetical protein | - |
| CVPH_RS06035 (CVPH_0944) | - | 952197..952874 (-) | 678 | WP_201340832.1 | hypothetical protein | - |
| CVPH_RS06040 (CVPH_0945) | - | 952877..953161 (-) | 285 | WP_201340833.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| CVPH_RS06045 (CVPH_0946) | hemC | 953165..954079 (-) | 915 | WP_201340834.1 | hydroxymethylbilane synthase | - |
| CVPH_RS06050 | - | 954137..954385 (+) | 249 | WP_225879658.1 | hypothetical protein | - |
| CVPH_RS06055 | - | 954382..954585 (+) | 204 | WP_201340836.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 34610.65 Da Isoelectric Point: 7.2103
>NTDB_id=65391 CVPH_RS06010 WP_201340827.1 949673..950629(+) (pilA) [Abyssogena phaseoliformis symbiont OG214]
MFNFLKKNQPKSESLDADKPTSLRQRLDKSRQKLGSSLSSLLLGKKEINEGLLEALETLLITADVGINTTDKILESVRKN
ASRKTLKDAESLYQFLKDELDKLLIEDNQLNTNINETFVILIVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAA
VEQLKVWGERNQIPVVAQTTGADAASVIFDAYQSAQTKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNANAPHETM
LVIDGGSGQNAINQAKEFNKAITLSGISITKLDGTAKGGVLFAIADELNLPIRYIGVGEGIDDLKVFQPKEFINALFD
MFNFLKKNQPKSESLDADKPTSLRQRLDKSRQKLGSSLSSLLLGKKEINEGLLEALETLLITADVGINTTDKILESVRKN
ASRKTLKDAESLYQFLKDELDKLLIEDNQLNTNINETFVILIVGVNGAGKTTLIGKLAKSFQNQGKSVMLAAGDTFRAAA
VEQLKVWGERNQIPVVAQTTGADAASVIFDAYQSAQTKNIDILIADTAGRLHTQDNLMQELAKIKRVIAKQNANAPHETM
LVIDGGSGQNAINQAKEFNKAITLSGISITKLDGTAKGGVLFAIADELNLPIRYIGVGEGIDDLKVFQPKEFINALFD
Nucleotide
Download Length: 957 bp
>NTDB_id=65391 CVPH_RS06010 WP_201340827.1 949673..950629(+) (pilA) [Abyssogena phaseoliformis symbiont OG214]
ATGTTTAATTTTTTAAAAAAAAATCAACCCAAATCAGAAAGTTTAGACGCAGACAAGCCAACTTCATTAAGACAACGCTT
AGATAAATCTAGACAAAAGTTAGGATCTAGCTTATCTTCTTTATTATTAGGTAAAAAAGAAATTAATGAGGGTTTATTAG
AAGCACTAGAGACGTTATTAATCACTGCTGATGTTGGCATTAATACCACGGATAAAATACTAGAATCTGTACGTAAAAAT
GCCTCTAGGAAAACCTTAAAAGATGCTGAAAGCTTATATCAATTCTTAAAAGATGAGTTGGACAAATTATTGATTGAAGA
CAACCAGCTTAATACTAATATTAATGAAACTTTTGTTATCCTAATCGTGGGCGTTAATGGCGCTGGTAAAACCACCTTGA
TTGGCAAGTTAGCAAAATCTTTTCAAAATCAAGGTAAGTCGGTTATGCTAGCAGCAGGTGATACCTTCCGCGCTGCAGCT
GTTGAACAACTTAAAGTATGGGGTGAGCGTAATCAAATACCCGTAGTTGCACAAACAACGGGTGCCGATGCAGCTTCGGT
TATCTTTGATGCCTACCAATCAGCACAAACTAAGAATATTGACATCCTAATTGCCGACACGGCAGGACGATTACACACGC
AAGACAACCTTATGCAAGAACTGGCCAAAATTAAACGCGTCATTGCCAAACAAAATGCAAATGCACCGCATGAAACCATG
TTGGTTATTGATGGTGGGTCAGGGCAAAACGCCATCAACCAAGCTAAAGAATTTAACAAAGCAATTACTCTAAGTGGTAT
TAGCATCACTAAGCTAGATGGCACTGCCAAAGGCGGGGTATTGTTTGCGATTGCCGATGAACTTAATCTGCCTATTCGTT
ATATTGGCGTAGGTGAAGGGATTGATGATCTTAAAGTCTTTCAACCCAAAGAATTCATTAACGCTTTGTTTGATTAA
ATGTTTAATTTTTTAAAAAAAAATCAACCCAAATCAGAAAGTTTAGACGCAGACAAGCCAACTTCATTAAGACAACGCTT
AGATAAATCTAGACAAAAGTTAGGATCTAGCTTATCTTCTTTATTATTAGGTAAAAAAGAAATTAATGAGGGTTTATTAG
AAGCACTAGAGACGTTATTAATCACTGCTGATGTTGGCATTAATACCACGGATAAAATACTAGAATCTGTACGTAAAAAT
GCCTCTAGGAAAACCTTAAAAGATGCTGAAAGCTTATATCAATTCTTAAAAGATGAGTTGGACAAATTATTGATTGAAGA
CAACCAGCTTAATACTAATATTAATGAAACTTTTGTTATCCTAATCGTGGGCGTTAATGGCGCTGGTAAAACCACCTTGA
TTGGCAAGTTAGCAAAATCTTTTCAAAATCAAGGTAAGTCGGTTATGCTAGCAGCAGGTGATACCTTCCGCGCTGCAGCT
GTTGAACAACTTAAAGTATGGGGTGAGCGTAATCAAATACCCGTAGTTGCACAAACAACGGGTGCCGATGCAGCTTCGGT
TATCTTTGATGCCTACCAATCAGCACAAACTAAGAATATTGACATCCTAATTGCCGACACGGCAGGACGATTACACACGC
AAGACAACCTTATGCAAGAACTGGCCAAAATTAAACGCGTCATTGCCAAACAAAATGCAAATGCACCGCATGAAACCATG
TTGGTTATTGATGGTGGGTCAGGGCAAAACGCCATCAACCAAGCTAAAGAATTTAACAAAGCAATTACTCTAAGTGGTAT
TAGCATCACTAAGCTAGATGGCACTGCCAAAGGCGGGGTATTGTTTGCGATTGCCGATGAACTTAATCTGCCTATTCGTT
ATATTGGCGTAGGTGAAGGGATTGATGATCTTAAAGTCTTTCAACCCAAAGAATTCATTAACGCTTTGTTTGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
53.691 |
93.711 |
0.503 |