Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L0669_RS04270 Genome accession   NZ_CP091861
Coordinates   941473..942834 (+) Length   453 a.a.
NCBI ID   WP_263761567.1    Uniprot ID   -
Organism   Flavobacterium bizetiae strain HJ-32-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 936473..947834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0669_RS04250 (L0669_04250) - 937988..938794 (-) 807 WP_056248169.1 glycogen/starch synthase -
  L0669_RS04255 (L0669_04255) panC 938873..939751 (+) 879 WP_263761564.1 pantoate--beta-alanine ligase -
  L0669_RS04260 (L0669_04260) panD 939766..940116 (+) 351 WP_026727479.1 aspartate 1-decarboxylase -
  L0669_RS04265 (L0669_04265) - 940319..941473 (+) 1155 WP_263761566.1 alpha/beta hydrolase-fold protein -
  L0669_RS04270 (L0669_04270) radA 941473..942834 (+) 1362 WP_263761567.1 DNA repair protein RadA Machinery gene
  L0669_RS04275 (L0669_04275) - 942924..943400 (-) 477 WP_263761570.1 DUF6252 family protein -
  L0669_RS04280 (L0669_04280) - 943657..945621 (+) 1965 WP_263761572.1 transglycosylase domain-containing protein -
  L0669_RS04285 (L0669_04285) - 945982..946731 (-) 750 WP_263761574.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49767.34 Da        Isoelectric Point: 6.3738

>NTDB_id=653905 L0669_RS04270 WP_263761567.1 941473..942834(+) (radA) [Flavobacterium bizetiae strain HJ-32-4]
MSKVKTSFFCQNCGTQYAKWQGQCNACKEWNTIAEEIIQKQEKVAWKSEPTPTGKAPRPLKINEIDSTQEIRMDTTDGEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPASENCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVSNPSEILISHKDEEMSGTAIATTMEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNITGGISVDDPAIDLAVVAAILSSNEDIPVTKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFTTIFVSKYNKIALKNTGIKIELVAKIEDVAGILFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=653905 L0669_RS04270 WP_263761567.1 941473..942834(+) (radA) [Flavobacterium bizetiae strain HJ-32-4]
ATGTCTAAAGTTAAAACTTCATTTTTTTGCCAGAACTGCGGCACCCAATATGCCAAATGGCAAGGACAATGCAATGCCTG
CAAAGAATGGAATACTATTGCAGAAGAAATTATTCAAAAGCAGGAAAAAGTGGCCTGGAAAAGTGAACCAACACCAACTG
GTAAAGCGCCACGTCCTTTAAAAATTAATGAAATTGATTCGACTCAGGAAATCCGAATGGACACTACTGATGGCGAATTG
AACCGTGTTCTAGGTGGCGGAATTGTTCCGGGATCTCTAACACTTTTGGGTGGTGAACCGGGAATTGGAAAAAGTACACT
TTTACTTCAAATCTCATTAAAATTACCTTATAAAACTTTATATGTTTCCGGTGAAGAAAGCCAGAAACAAATAAAAATGC
GTGCCGAAAGAATCACGCCAGCCAGCGAGAATTGTTATATCCTTACGGAAACAAAAACGCAGAATATCTTTAAACAAATT
GAAGCGATTCAGCCTGAAATTGTCATTATCGACTCAATTCAGACTTTACATACAGATTATATCGAATCAACAGCCGGAAG
TATTTCTCAAATTAGAGAAACCACTGCGGAGTTGATCAAGTTTGCGAAAGAAACTAATATTCCGGTTATTTTAATTGGAC
ATATTACGAAAGACGGAAACATCGCCGGACCAAAAATCCTGGAACATATGGTTGATACCGTTTTGCAGTTTGAAGGCGAT
CGAAATCACGTGTACCGAATTTTACGTTCACTAAAAAACCGTTTTGGTTCTACCGCTGAATTGGGAATTTATGAAATGTT
AGGCAGCGGATTAAGAGAAGTTTCTAATCCGTCAGAAATATTGATTTCGCACAAAGACGAAGAAATGTCAGGAACTGCAA
TTGCCACAACCATGGAAGGCATGCGTCCGTTAATGATCGAAATACAATCATTGGTAAGTACCGCAGTTTACGGAACTCCG
CAACGAAGCACAACGGGTTACAATGCCAAAAGATTAAATATGATTTTGGCTGTTTTAGAAAAAAGAGCCGGATTTCGTTT
AGGCGCAAAAGATGTCTTTTTGAACATAACCGGAGGAATTTCTGTTGATGATCCCGCAATTGACCTTGCCGTTGTTGCCG
CCATTTTATCATCAAACGAAGATATTCCGGTAACAAAAGGTTTCTGTTTTGCCGGTGAAGTTGGACTTTCTGGAGAAATT
CGTCCTGTAAATCGTGTAGATCAGAGAATTCAGGAAGCTGAAAAATTAGGGTTTACGACTATTTTTGTGTCTAAATACAA
TAAAATTGCCTTAAAAAACACTGGAATCAAGATTGAGCTTGTTGCCAAAATTGAAGATGTGGCAGGTATTCTTTTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

51.054

94.26

0.481
  radA Streptococcus pneumoniae Rx1

51.054

94.26

0.481
  radA Streptococcus pneumoniae D39

51.054

94.26

0.481
  radA Streptococcus mitis NCTC 12261

51.054

94.26

0.481
  radA Streptococcus pneumoniae TIGR4

51.054

94.26

0.481
  radA Streptococcus mitis SK321

51.054

94.26

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

49.306

95.364

0.47