Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG965_RS39495 Genome accession   NZ_CP108106
Coordinates   8826668..8826904 (+) Length   78 a.a.
NCBI ID   WP_371647912.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8821668..8831904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS39470 (OG965_39370) - 8822144..8822683 (-) 540 WP_371647920.1 hypothetical protein -
  OG965_RS39475 (OG965_39375) - 8823439..8823927 (+) 489 WP_371647918.1 DUF4265 domain-containing protein -
  OG965_RS39480 (OG965_39380) - 8824069..8824605 (-) 537 WP_371647916.1 DUF4240 domain-containing protein -
  OG965_RS39485 (OG965_39385) - 8825297..8825383 (-) 87 Protein_7801 integrase/recombinase -
  OG965_RS39490 (OG965_39390) - 8825487..8825948 (+) 462 WP_371647914.1 hypothetical protein -
  OG965_RS39495 dinR/lexA 8826668..8826904 (+) 237 WP_371647912.1 LexA family protein Regulator
  OG965_RS39500 (OG965_39400) - 8827208..8828155 (-) 948 WP_371647910.1 FG-GAP repeat domain-containing protein -
  OG965_RS39505 (OG965_39405) - 8828375..8828566 (+) 192 WP_371647908.1 hypothetical protein -
  OG965_RS39510 (OG965_39410) - 8828576..8828842 (+) 267 WP_371647906.1 hypothetical protein -
  OG965_RS39515 (OG965_39415) - 8828921..8830234 (-) 1314 WP_371647904.1 helix-turn-helix domain-containing protein -
  OG965_RS39520 (OG965_39420) - 8830357..8831154 (-) 798 WP_371647902.1 SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 8301.74 Da        Isoelectric Point: 4.6174

>NTDB_id=653905 OG965_RS39495 WP_371647912.1 8826668..8826904(+) (dinR/lexA) [Streptomyces sp. NBC_00224]
MIDAGIRDGDIVVIRRQRAAELGDIVAALLGTGEATVKKLRIADDGVWLMPCNPAFSPISLDDDGMILGRVVAVLRSL

Nucleotide


Download         Length: 237 bp        

>NTDB_id=653905 OG965_RS39495 WP_371647912.1 8826668..8826904(+) (dinR/lexA) [Streptomyces sp. NBC_00224]
ATGATCGACGCAGGTATCCGGGACGGCGACATCGTCGTCATCAGGCGTCAACGTGCTGCCGAGCTCGGCGACATCGTGGC
CGCGCTGCTGGGCACCGGGGAGGCCACGGTCAAGAAACTCCGGATCGCGGACGACGGAGTGTGGCTGATGCCCTGCAACC
CGGCCTTTTCCCCCATCAGCCTCGACGACGACGGCATGATCCTCGGCCGGGTCGTCGCCGTTCTCCGGTCGCTGTAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.59

100

0.436